RNA id: TU1202



Basic Information


Item Value
RNA id TU1202
length 562
RNA type TUCP
GC content 0.35
exon number 4
gene id G1012
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 6487692 ~ 6494905 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCGGCAAACGGAAGCGTGGTAGAGCCGGGGAGGTTGCCTGTTCTggtttatattgtattgcatgTAGTGTAACTCAACGTTGTTTACATATAATAACAACCTGATACAATGTCAAGTAACAGGAAAGAAGTATTCCAGGACAAAGTTTTCAAGAGACTCTATCAGTCTTCCCAAAAGACTTGCAAAGTGATGAACACTGGTGCAGAAAAAACTTCTGGACActcaactgaaaatgcacttgTAAAGGCAAAAGTCAACAGAAGCATAACATCAGcagaggaagaaaaaaactgtgtgCTACAAAGGAGACTGTACACGGTTTGTCCTCCCCCCAGTGAAATTAAGACGGTTTGTGAAAGATCTGGCAAGCTGTCTGAGCCAGAAGAGACACATATTGAAGGAGACCCAGCTGGTCGGTTGGTATTAATATGTTTGtgattattgtattgaacagtgttttaaataaaaccgcAGTGTATTAAACTCTCAACTAGAttaaattctgtacattttaatagagGTAAGTTGTGTACTTGTGCTGtaaggattttttaaatttttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1177 lncRNA upstream 501298 5986038 ~ 5986394 (+) True G990
TU1170 lncRNA upstream 531872 5955604 ~ 5955820 (+) True G983
TU1140 lncRNA upstream 657947 5829459 ~ 5829745 (+) True G960
TU1088 lncRNA upstream 929177 5557607 ~ 5558515 (+) True G908
TU1087 lncRNA upstream 931386 5550745 ~ 5556306 (+) True G907
TU1358 lncRNA downstream 578499 7073404 ~ 7073609 (+) True G1146
TU1403 lncRNA downstream 870039 7364944 ~ 7365477 (+) True G1187
TU1436 lncRNA downstream 994540 7489445 ~ 7489881 (+) True G1218
TU1445 lncRNA downstream 1003162 7498067 ~ 7498344 (+) False AMCG00003524
TU1466 lncRNA downstream 1028956 7523861 ~ 7750465 (+) True G1241
AMCG00003499 mRNA upstream 111393 6375259 ~ 6376299 (+) True AMCG00003499
AMCG00003500 mRNA upstream 220185 6266901 ~ 6267507 (+) True AMCG00003500
AMCG00003496 mRNA upstream 572100 5914471 ~ 5915592 (+) True AMCG00003496
AMCG00003497 mRNA upstream 661960 5824581 ~ 5825732 (+) True AMCG00003497
AMCG00003498 mRNA upstream 717755 5767358 ~ 5769937 (+) True AMCG00003498
AMCG00003501 mRNA downstream 125906 6620811 ~ 6646702 (+) True AMCG00003501
AMCG00003505 mRNA downstream 228625 6723530 ~ 6736370 (+) True AMCG00003505
AMCG00003506 mRNA downstream 323711 6818616 ~ 6825710 (+) True AMCG00003506
AMCG00003507 mRNA downstream 333024 6827929 ~ 6870265 (+) True AMCG00003507
AMCG00003513 mRNA downstream 544906 7039811 ~ 7040909 (+) True AMCG00003513
TU1569 other downstream 2154220 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 2760923 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 3282603 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 4995280 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 5078826 11573731 ~ 11577329 (+) True G1989

Expression Profile