G1187


Basic Information

Item Value
gene id G1187
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 7364944 ~ 7365477 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU1403
tctcattcctgtttaattgtttagtctgaaattgacacacgttaatagacaccagattataggtggccctgcctatccttaatcattgaataataatcagttaagggaaattgtggtaacaagtaatgataggatctttctcggcacctaaacgtaaatgagactgatatatatataacgggAAGTTACCTGatataaatactaacctgcgtagttatttgatgtccgactaacaatactaatgagagactcaccttcgtcttactaaccggtattgtagtcaatgtgtttataaccttttttgtttaacgatttgtgtgataTCATATGCAAtaccatggtctttgatttggtcacggaagtgatttgtctttgatttgtgaTCTAGAGTGAATttgaattagtttttccctttttgtatgattagtgtagtgctacatttagtctttgtttttaataaatttgacaatttaaatctttggaattggtgtctgcgtccatttattatggaaattgagttctacaagattccag

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1403 True 534 lncRNA 0.43 1 7364944 7365477

Neighbor

gene id symbol gene type direction distance location
AMCG00003516 NA coding upstream 317541 7045216 ~ 7047403 (+)
AMCG00003513 NA coding upstream 324035 7039811 ~ 7040909 (+)
AMCG00003507 NA coding upstream 494679 6827929 ~ 6870265 (+)
AMCG00003506 NA coding upstream 539234 6818616 ~ 6825710 (+)
AMCG00003505 NA coding upstream 628574 6723530 ~ 6736370 (+)
AMCG00003523 NA coding downstream 43068 7408545 ~ 7410129 (+)
AMCG00003522 trappc12 coding downstream 57326 7422803 ~ 7438447 (+)
AMCG00003529 NA coding downstream 87934 7453411 ~ 7459476 (+)
AMCG00003527 NA coding downstream 101444 7466921 ~ 7482206 (+)
AMCG00003521 NA coding downstream 139986 7505463 ~ 7514410 (+)
G1146 NA non-coding upstream 291335 7073404 ~ 7073609 (+)
G990 NA non-coding upstream 1378550 5986038 ~ 5986394 (+)
G983 NA non-coding upstream 1409124 5955604 ~ 5955820 (+)
G960 NA non-coding upstream 1535199 5829459 ~ 5829745 (+)
G908 NA non-coding upstream 1806429 5557607 ~ 5558515 (+)
G1218 NA non-coding downstream 123968 7489445 ~ 7489881 (+)
G1241 NA non-coding downstream 158384 7523861 ~ 7750465 (+)
G1242 NA non-coding downstream 161382 7526859 ~ 7528458 (+)
G1253 NA non-coding downstream 430974 7796451 ~ 7796854 (+)
G1271 NA non-coding downstream 910285 8275762 ~ 8276983 (+)
G1012 NA other upstream 870039 6487692 ~ 6494905 (+)
AMCG00003480 NA other upstream 2030192 5303450 ~ 5334752 (+)
AMCG00003469 NA other upstream 2842544 4514031 ~ 4522400 (+)
AMCG00003473 NA other upstream 2909802 4452564 ~ 4455142 (+)
AMCG00003524 rps7,LOC107668222 other downstream 132563 7498040 ~ 7504015 (+)
AMCG00003534 id2,LOC106566577 other downstream 1283648 8649125 ~ 8652470 (+)
AMCG00003541 asap2,LOC106566627 other downstream 1534979 8900456 ~ 8941751 (+)
AMCG00003544 NA other downstream 1710413 9075890 ~ 9106765 (+)
AMCG00003551 NA other downstream 1890351 9255828 ~ 9263468 (+)

Expression


Co-expression Network