RNA id: AMCG00003513



Basic Information


Item Value
RNA id AMCG00003513
length 216
RNA type mRNA
GC content 0.47
exon number 2
gene id AMCG00003513
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 7039811 ~ 7040909 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGACCTCAAACGACCATTCAAGACCATGATGGAGtTATCTGCAACGTATGGCTCGGTGTTCAGTATTCAGCTGGGCCTGAGGAAAATGGTGGTCCTTTCTGGATATGAGACTGTAAAGGAGGCTCTTGTAACCCATGCGGATGAATTTGCTGAGCACCCTGACATCCCAATATTCAAGAGAATTACCGGAGGAAATGGTACCCTCAGCCTTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1177 lncRNA upstream 1053417 5986038 ~ 5986394 (+) True G990
TU1170 lncRNA upstream 1083991 5955604 ~ 5955820 (+) True G983
TU1140 lncRNA upstream 1210066 5829459 ~ 5829745 (+) True G960
TU1088 lncRNA upstream 1481296 5557607 ~ 5558515 (+) True G908
TU1087 lncRNA upstream 1483505 5550745 ~ 5556306 (+) True G907
TU1358 lncRNA downstream 32495 7073404 ~ 7073609 (+) True G1146
TU1403 lncRNA downstream 324035 7364944 ~ 7365477 (+) True G1187
TU1436 lncRNA downstream 448536 7489445 ~ 7489881 (+) True G1218
TU1445 lncRNA downstream 457158 7498067 ~ 7498344 (+) False AMCG00003524
TU1466 lncRNA downstream 482952 7523861 ~ 7750465 (+) True G1241
AMCG00003507 mRNA upstream 169546 6827929 ~ 6870265 (+) True AMCG00003507
AMCG00003506 mRNA upstream 214101 6818616 ~ 6825710 (+) True AMCG00003506
AMCG00003505 mRNA upstream 303441 6723530 ~ 6736370 (+) True AMCG00003505
AMCG00003501 mRNA upstream 393109 6620811 ~ 6646702 (+) True AMCG00003501
AMCG00003499 mRNA upstream 663512 6375259 ~ 6376299 (+) True AMCG00003499
AMCG00003516 mRNA downstream 4307 7045216 ~ 7047403 (+) True AMCG00003516
AMCG00003523 mRNA downstream 367636 7408545 ~ 7410129 (+) True AMCG00003523
AMCG00003522 mRNA downstream 381894 7422803 ~ 7438447 (+) True AMCG00003522
AMCG00003529 mRNA downstream 412502 7453411 ~ 7459476 (+) True AMCG00003529
AMCG00003527 mRNA downstream 426012 7466921 ~ 7482206 (+) True AMCG00003527
TU1202 other upstream 544906 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 1608216 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 2214919 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 2736599 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 4449276 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 4532822 11573731 ~ 11577329 (+) True G1989

Expression Profile