RNA id: AMCG00003580


Basic Information

Item Value
RNA id AMCG00003580
length 3060
RNA type mRNA
GC content 0.54
exon number 20
gene id AMCG00003580
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 10475837 ~ 10495920 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAAGATGTGAAGGAATCCGCCTGTTTTTACTGTGGCTCCAAGCGCTGCAGAACAATTGCTCTGAAGAGCAGCTTTTAATTTTTGCGTGCCTGGTGCCAGGGTTCCCAGCAGTGCCCTCCACCAGGGGTCCTTGTACTCTGGACACCATCATTTACAACCCGTTCTCCAACCCCCCTGACGCCAAGGTCATCCCTGAAGAGATCACACCTCTTGTGCCAGCCGTAGCAGGTGAAAAACTAGCCGATGACCAGACCTGTTATATTCTTCAAACTCTTCTGAAGTACATGGTCATTCAGGCTTCAAGCTTGGAGTGGAGAAACCGAGGAAACCAAGACACTGGCTTCAGGTTCCTCTTCACGCTGTTCAAGAAGTATTACCTTCCCCACTTGTTTCCGTCCTTTACAAAGCTAACCAACTTGTACAAGCCTTTGCTAGATATTCCTCACCTGAGACCAAAGCCTTTATATGTTCCTGTGACTCGCAACAATGAGAGCACCTACTGCACGAGGGACCAGTACTTGGCGCCACGCGTTGCTTTTATTAAATGGCTGGTGACCTTCTTTCTGGAAAAGAAGTACGTCACGCCAGCGGTTCAGAACACTAAGAATGGAGCCGAGGTGCTTCCCAAGATAATGCAGACTGTGACTGCGGGCAGTGCCAGTCAGGACAAGAACGCGGAAGTGGAGATGAACGGCCCCACAGAGCAGGACAAGAGCCACTCCAACAGCAGCACCCTGTCTGACCGCCGACTCAGCAACTCCAGTCTGTGCAGCATCGAGGAGGAGCACCACGTGGTCTACGACATGGTGCACTACATCCTGCTGTCCACCAGGGACAACGTCAACTTCGTCAATGAAGTGTTTCATCAGGCTTTTCTCTTGCCTTCTTGTGAGGCCTCAGCAACTAGAAAGGTGATCAAAGTTTACAAAAATTGGATTCTCCAAGAAAAGCCAACCTTTATGAATGAGCCAGACAAGGGCAAacaggaggaggagacggaggacTCTTCTGAGCTGCTGACCGAAACTGACAGCAAACAGGTGCCGGAGAATCCCGGGCACAAGCGCTCCTCGAGTTGGGGCCGGACGTACTCTTTCAGCAGTGCGATAAGCAGGGGCTGCGTGGTGGAAGAGAAGAACAAGGAAGTCAAGGCTGGCATCCAGTCTGTGCTTCAGGTTTTCTTGACCAATTCAGCAAATGTCTTCTTACTTGAGCCGTGCCATGACGTGCCCAAGCTGATGGAGGACCAGGTGGAAGTGTGTAAAGGGGTGCTCTACATTTACCGACGGATGATCATGGAACATGCAATGAATAAAAAGACATGGGAGCAAATGCTGCAAGTGCTACTCAGGATCACAGAGTCTGTGATGAGGAGACCCCTGGAGACCCAGAAAAAGGATACTTTTGCAGAGAGCCTGGCGGGACTTCTCTTTAGGACGATCATAGTGGCCTGGGTGCGGGCCAACCTGAGCGTCTTCATCTCCCGGGAGCTGTGGGACGAGTTGCTGGCCGTGCTGTCCTCCCTGACCAACTGGGAAGAGCTGGTGACCGAGTGGGCCAACATCATGGACTCCCTGACCGGCGTGCTGGCGCGCTCCGTCTACGGCCTGGACATGAGCAGCCTGCCCCTGGACAAGCTGAGCGAGCAGAAGGAGAAGAAGCAGAGAGGCCGAGGTGTGATTCCAGACGCTCAGAAGGCCTCTGCAGTGGGACGGTCTTTTTCTCTGAGCTGGAGGAATCAAGGCGACGTTCAGGAGCCCATGAGGTTCAGGAGCGCCACCACGTCCGGTGCTCCTGGGGTGGAGAAAGCCCGGAATATCGTTCGCCAGAAAGCTACAGCTAAGCGAAGCCAGTCTATCAGCAACTGTGTGCACCTTTACGAGGCTTTGCCTGCTACTAAAAGCGTGCCTATGCTTCTGCACACTGTGAGCTCTTTCTTGCCTGGTATCTCTTCCAACTCTTGCTCTCACAGACTTTCAGAGGTGGCGGAGGGCCACGACTGCGGCCCCGATGGGGAGCCAGCGGACGGAGAGCAGCTCCCGCGAAGCAGCAGCACTTCAGACATCTCACAGCCGCTCTCGGACACCTTCCAAGGTCAGAAAAGGGAATCCTCACCAATTTCCAACAGTTCGGACCCAAGAGCTAGTGGTTTAGAGAGCAACACACCCggcaggagagagagcgagccCCCTATTTTAATCCGACGGAGCAGTAGTCCTGCCGATCTGGACTATCCCGGGGACTTACCTTCCGGAAAGATGAGTCATCGGGAGAAAACTGAGAGTGTGAGCAGTGAGACCTCAAATGGCTACCTCAATGACGCTGATGTCAGCATGATGTCATGGCAGACCTTCGAGGAGGAGCCCGACTGCCAGTCTCCCCACGATGTCACCATTGACCCAGACTCCCAGAGAAGCCTCCTGCAGCTCAGCCCCACTGAAGCCCTCACAGGTTGTGATTgtgccctccctccccactccgcACCTTCCTCCCACCCCCAGCCCCCCTCTGCCTCACCAGCTTTGCTAGTACAACCCGACTGCAAGGACTGCCCCCCCCTCCTGGAGGAAACCATGCATCAATCTGTATTGCACATGCCTGAGGACTTGGACAGCAGCGAATGCCTGGCCGATGACATTAGTATCATTGCGGGGGGCAGTCTCACCGGCTGGCATCCTGACTCCGCAGCTGTGCTGTGGAGGAGGATTCTGGGAATTCTGGGAGACGTCAACTGCATCCGCTGCCCCAGAATCCACGCCAAGGTGTTCTGCTATCTGTACGAACTGTGGCACAAACTGGCAAAGATCCGAGATAACCTTGGTATAAGTGTTGATAACCAGTCTTCTCCCCCCCGGCCCATCCTCATCCCTCCGCTCAGAATGTTTGCTTCCTGGTTGTTTAAGGCAACTACTCTGCCTTCTGAGTTCAAAGAAGGGAAGCTACAGGCATACAAGCTAATTTGTGAGATGATGACCAAACACCAAGATGTCCTCCCCAACTTGGATTTCCTTGTGCACTTCTACCATGTCATGCATTTGGGTTTTACCAGCGAAGATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2056 lncRNA upstream 18072 10431664 ~ 10457765 (+) True G1747
TU2011 lncRNA upstream 237576 10236856 ~ 10238261 (+) True G1706
TU1863 lncRNA upstream 772359 9700557 ~ 9703478 (+) True G1574
TU1701 lncRNA upstream 1369073 9100618 ~ 9106764 (+) False AMCG00003544
TU1676 lncRNA upstream 1448205 9009297 ~ 9027632 (+) False G1430
TU2211 lncRNA downstream 554231 11050151 ~ 11050644 (+) True G1855
TU2254 lncRNA downstream 732039 11227959 ~ 11228275 (+) True G1891
TU2270 lncRNA downstream 835119 11331039 ~ 11403029 (+) False G1902
TU2269 lncRNA downstream 872103 11368023 ~ 11403029 (+) True G1902
TU2326 lncRNA downstream 966418 11462338 ~ 11482931 (+) False AMCG00003604
AMCG00003576 mRNA upstream 244166 10230121 ~ 10231671 (+) True AMCG00003576
AMCG00003575 mRNA upstream 293877 10179342 ~ 10181960 (+) True AMCG00003575
AMCG00003571 mRNA upstream 580849 9892778 ~ 9894988 (+) True AMCG00003571
AMCG00003568 mRNA upstream 599994 9866100 ~ 9875843 (+) True AMCG00003568
AMCG00003569 mRNA upstream 622165 9820927 ~ 9853672 (+) True AMCG00003569
AMCG00003581 mRNA downstream 10638 10506558 ~ 10532085 (+) True AMCG00003581
AMCG00003583 mRNA downstream 121637 10617557 ~ 10623372 (+) True AMCG00003583
AMCG00003590 mRNA downstream 133653 10629573 ~ 10631480 (+) True AMCG00003590
AMCG00003585 mRNA downstream 140568 10636488 ~ 10657573 (+) True AMCG00003585
AMCG00003591 mRNA downstream 529289 11025209 ~ 11048576 (+) True AMCG00003591
TU1883 other upstream 694935 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 1212369 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 1823433 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 3980932 6487692 ~ 6494905 (+) True G1012
TU2334 other downstream 994265 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 1077811 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 2541517 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 2659140 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 3922596 14418516 ~ 14419732 (+) True G2440

Expression Profile