RNA id: TU278517


Basic Information

Item Value
RNA id TU278517
length 940
lncRNA type sense_over
GC content 0.41
exon number 4
gene id ralgapa2
representative False

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 24329113 ~ 24447362 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCGTATTCATATAATGTGACCACTCCTCTCTGTCAGGCTGAGCTTCCGTGTTTGcacacccacaaaaaaaaaacaggacactAGTGGCCGGCAGACGAATGTTTACCGAGCAGACATAGAGTGGTGGTGAGGAAAGTGACAGTTACACTGGAGGCTTGGTGTATGGTGAAACACAGGTGATTTCAGCTTCCACGGTTGCATTTTACAGCGGAATGTTCACTCGAAGGGGGCATGGAGACGTCAAGAAATCTACACAGAAAGTTCTGGACCCAAAGAAGGATGTACTGACACGGCTCAAACACCTCCGGTCACTGTTAGataTCATTGACAAGAGTGAACTGAAGGCGTTCTTTGAAAGCAACTGTTCTCAGATTTATTTCATCTTCTATGAAAACTTCATTACACTGGAAAgcaacttaaaacaaaaagGGAACAAATCTCAAAGGGAGGAGCTGGACTCTATCCTCTTTATTTTTGAAGATATGACCTCACCATGACCTGCCGTCTGTCATCCGGACCCAACTCCGCATTCTGAATTCCCCTTGTCATCCTCTGTAAAAGTCCCTTATCTCAATTTGATACTTGACTTACTGAGTTGCCTTATATGGGtatttctgatttattatttttgtgataGATAACTGAATTTAATTCAGCTCAGGGGTACTGCAAAAGCTGTTGTCTTATAGAAAACTGCAGAAAATCTAAGGCTTTTGTCtgattaacctttatttaaccaagaTGGTGTCTTGAGATTGAAATCTAAGGGGTGTCCTGGCCAAAATTACAGCACAACTATCTTCATAAAACAGAACCAACATACAAAGTAAGAAGAGGAATACAGAAAAGCGTGTAAACCTTTTCCGTTACCACCCTTGTTTGTAATGAACTTGCTATActtatatgttttatgtttagtAACCGAATAAACCTTCATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637380.1 lncRNA upstream 12390 24308129 ~ 24316723 (+) True LOC120549384
TU278477 lncRNA upstream 171660 24157200 ~ 24157453 (+) True G205630
TU278439 lncRNA upstream 286202 24042572 ~ 24042911 (+) True G205592
TU278435 lncRNA upstream 286636 24026975 ~ 24042477 (+) False LOC120548718
TU278535 lncRNA downstream 122104 24478020 ~ 24478375 (+) True G205674
TU278673 lncRNA downstream 398301 24754217 ~ 24755481 (+) False mgst3b
TU278675 lncRNA downstream 401407 24757323 ~ 24766129 (+) True G205786
TU278702 lncRNA downstream 494063 24849979 ~ 24919202 (+) True LOC120549090
XR_005637327.1 lncRNA downstream 494304 24850220 ~ 24919193 (+) False LOC120549090
XM_039785343.1 mRNA upstream 129577 24196166 ~ 24199536 (+) True nkx2.4a
XM_039785344.1 mRNA upstream 129577 24196166 ~ 24199536 (+) False nkx2.4a
XM_039784998.1 mRNA upstream 147642 24175913 ~ 24181471 (+) True nkx2.2a
XM_039785628.1 mRNA downstream 112613 24468529 ~ 24472456 (+) False gale
XM_039785626.1 mRNA downstream 112614 24468530 ~ 24472456 (+) True gale
XM_039785627.1 mRNA downstream 112620 24468536 ~ 24472456 (+) False gale
XM_039785631.1 mRNA downstream 117128 24473044 ~ 24476916 (+) False zbtb8a
XM_039785632.1 mRNA downstream 117129 24473045 ~ 24476916 (+) False zbtb8a
TU278270 other upstream 793443 23531063 ~ 23535670 (+) False si:ch211-195o20.7
TU278034 other upstream 1482705 22833987 ~ 22846408 (+) True G205294
TU277824 other upstream 1800364 22525161 ~ 22528749 (+) False srp14
TU277801 other upstream 1963213 22363688 ~ 22365900 (+) True gchfr
TU277798 other upstream 1963261 22363688 ~ 22365852 (+) False gchfr
TU278672 other downstream 401945 24757861 ~ 24759494 (+) True mgst3b
unassigned_transcript_1160 other downstream 720867 25076783 ~ 25076864 (+) True trnas-gcu_19
TU278848 other downstream 793535 25149451 ~ 25153296 (+) False LOC120549233
TU278847 other downstream 794024 25149940 ~ 25153296 (+) False LOC120549233
XR_005637370.1 other downstream 2459559 26815475 ~ 26832435 (+) False LOC120549312

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU2056 True 435 lncRNA 0.51 3 CM030121.1 10431664 ~ 10457765 (+)