RNA id: TU278477


Basic Information

Item Value
RNA id TU278477
length 254
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G205630
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 24157200 ~ 24157453 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaactgacacacagagagcaaaacctcttctcaagtctccaaaactctaaacacattttctgctttacacacattttgcaattcgaaatggcactttttaaatgcactgaacacggttctctgcataagacacaacaatctgacataaagtcacatgtttgccatttcaaaacactgccattcaaaatgacactacatgagcttATTGGCCAACATATGCGCCACCAGGCCAAACACCTCAATGCTTAATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278439 lncRNA upstream 114289 24042572 ~ 24042911 (+) True G205592
TU278435 lncRNA upstream 114723 24026975 ~ 24042477 (+) False LOC120548718
TU278436 lncRNA upstream 114723 24026975 ~ 24042477 (+) False LOC120548718
TU278437 lncRNA upstream 114723 24026975 ~ 24042477 (+) False LOC120548718
XR_005637264.1 lncRNA upstream 114752 24026934 ~ 24042448 (+) True LOC120548718
XR_005637380.1 lncRNA downstream 150676 24308129 ~ 24316723 (+) True LOC120549384
TU278517 lncRNA downstream 171660 24329113 ~ 24355916 (+) False ralgapa2
TU278535 lncRNA downstream 320567 24478020 ~ 24478375 (+) True G205674
TU278673 lncRNA downstream 596764 24754217 ~ 24755481 (+) False mgst3b
TU278675 lncRNA downstream 599870 24757323 ~ 24766129 (+) True G205786
XM_039785092.1 mRNA upstream 132254 24022703 ~ 24024946 (+) True foxa2
XM_039785698.1 mRNA upstream 144911 23974227 ~ 24012289 (+) True prkd3
XM_039785699.1 mRNA upstream 144911 23974227 ~ 24012289 (+) False prkd3
XM_039785697.1 mRNA upstream 183649 23966261 ~ 23973551 (+) True mocs3
XM_039786167.1 mRNA upstream 381242 23751268 ~ 23775958 (+) False tfb1m
XM_039785002.1 mRNA downstream 13394 24170847 ~ 24181471 (+) False nkx2.2a
XM_039784999.1 mRNA downstream 16426 24173879 ~ 24181471 (+) False nkx2.2a
XM_039785003.1 mRNA downstream 18460 24175913 ~ 24186610 (+) False nkx2.2a
XM_039784998.1 mRNA downstream 18460 24175913 ~ 24181471 (+) True nkx2.2a
XM_039785001.1 mRNA downstream 18460 24175913 ~ 24181471 (+) False nkx2.2a
TU278270 other upstream 621530 23531063 ~ 23535670 (+) False si:ch211-195o20.7
TU278034 other upstream 1310792 22833987 ~ 22846408 (+) True G205294
TU277824 other upstream 1628451 22525161 ~ 22528749 (+) False srp14
TU277801 other upstream 1791300 22363688 ~ 22365900 (+) True gchfr
TU277798 other upstream 1791348 22363688 ~ 22365852 (+) False gchfr
TU278518 other downstream 171660 24329113 ~ 24355916 (+) False ralgapa2
XR_005637306.1 other downstream 171694 24329147 ~ 24443950 (+) False ralgapa2
TU278672 other downstream 600408 24757861 ~ 24759494 (+) True mgst3b
unassigned_transcript_1160 other downstream 919330 25076783 ~ 25076864 (+) True trnas-gcu_19
TU278848 other downstream 991998 25149451 ~ 25153296 (+) False LOC120549233

Expression Profile