RNA id: XM_039785002.1


Basic Information

Item Value
RNA id XM_039785002.1
length 4616
RNA type mRNA
GC content 0.42
exon number 3
gene id nkx2.2a
representative False

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 24170847 ~ 24186610 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGATATTTCATTAACTCTGCGCGCTGTCTTAACGCTGGCAACACATTCAGCCCCCTCCTGTCTAGCGGATTGTCCGAAAAGCTGGTGCAGCAACTTTTCCCTGCATATTTCCCCCCACCAGAATATGTCGTTGACCAACACAAAGACGGGCTTTTCTGTAAAGGACATTTTGGACCTTCCTGACACAAATGACGAAGAAGGATCTATCACCGGAGCGGAGGAAGACACGGAGGGATCGGAGACCACGTCCACGACAAAAAACACTGGAGTTTTGGTGCAAAGTCCTCTAGAAAACGTTCCTAATCTGCCTTTAAAGAATCCCTTTTATGATAGTAGTGACAATCCTTACACACGATGGCTTGCTACTACGGACAGTATTCAATATTCATTGTTTCTCCCGTTTCTTGCCGCAGTGCACGGTCTATCCGCCAGCTCTCAGGACTCGGCCAAGTCCCCGGAGCCGTCCGCGGACGACGAATCGCCGGACAACGATAAAGAAACTTCCAGCAGCGGCGGCAGCGACTCCGGCAAGAAACGGAAAAGGAGGGTGTTGTTTTCCAAGGCGCAAACTTACGAGCTGGAGCGTCGCTTCAGGCAGCAGAGGTACCTGTCCGCCCCGGAGAGGGAGCACCTGGCCAGCCTGATTCGCCTCACCCCGACCCAGGTGAAGATCTGGTTCCAGAACCACCGGTATAAGATGAAGAGAGCCCGGGCCGAGAAAGGTATGGAAGTGACCCATCTCCCTTCTCCCAGGCGGGTGGCCGTGCCCGTCTTAGTCAGGGATGGAAAGCCTTGTCACACTCTTAAAGCTCAGGACTTGGCGGCCACTTTTCAGGCCGGGATCCCCTTCTCGGCTTATAGTGCCCAGTCACTCCAACACATGCAGTATAACGCGCAGTACAGCGCCGCGGCCACGCCACAGTTCCCAGCACATCACTTGGTGCAAACGCAACAGTGGACTTGGTGAGAGAAATTATAGAGACTTGGCTTGGAGGCACGGTAGGGAGTTTCACcacaaagcaaagaaaaaaaataaaacgcaaaaaacaaaagacttttcaTTTTTGCAGCTtgactcatatatatatactaccaTTTTTATTCGGGGCTCATGTGTGCGCCGTGTTTACATGTTTTCGTTAAGAGAACTGGGTCCGAACCTCTCCCTTATAGATTTTATTGAGAATGTCAATGCTCTTCTTGTGAATTTTTTTGTAAAGTATGTTGTGTGTTGGTTGTAGagatgtttttctctttttttttcttttgtccctTCGTGTTATTATCAGCACGTACGAACCACTTTATAATTATAGAAATTTTAATTTCTTGCTTCTTTTATGGAccgaaaaaaatatttatggccATGAATAAACACTGGCAACTTTGCAGctattttccttttgtttttatttcctgtaaatattttgtggcAAATGTTTGCAACATAGAGAGCTTTAGGGAGCTTAAAGCTGAAGTTTGGCCTCTATATATTTACACAAAAACAACGGGGGAGTGATTTTTGGCAAAACGTTGTGACTACACATATGTAAATAACAGTGTAGCCGCGCGGTGTTGGCTAAATATCCCACAATTTTTTATaaggattttaaaataaaatgctgtgTTTTTGAAAAGAGGGTTTGGTTTATATAAGTGTCCATATTCGATTTGATCATCTCTGAAAAGACATCTAAACATCACAATGAAAGGCGAGGAGTTAAACACTATATTGTGGGACAGAATGGAGCTTGACTCTGGGAATAAATCTCTAGCGCACTTCAGTTCTTTCTTTTTAGGCAAATTTAATCCGGAGAATATTTTTTCCCAATCCGAACACCTCACTAATAAAGAGCCTAAAGTCACTTGTGAAATGGGACCAAAATCCACTCACTTAATATAAGAGGGCTTCTTCACACAAGAAGCTTTTGAGTCAAAAGCTCTCCTTTTTGTCAGCATTCCCACTCCCGGCCTTGGGCGTAAAGTGGCAGACTGTGGGGGGAAAATCGTTTTAATGCAATAAATGTTTTGTTATCTTGTTAAGCGCTAAACTGCAAATAGAGCAGGAATAATCAATGAGTCACCAGTCTTCTTTGTTTAACCACGGCGAACGGTCAACTAAAATACGCACGGCTTAGAGGGGCTTTTACCGCCTAATAAAGTTACTTTTCATATGATCATATAACGTGTTAGCAATGACATTCCACATTCAACTATACTTTGCTCTAATAGTCACCATCTTATTTAAGGTGAAACCAAAACAAGCACAAATGGCTCCCCAGTGATCCGTAGCGCACTGCGGATTATCAGATCCAGTCAATATCTTGGGTAAATATGATAACCTAGTAGAAAAATCTATGCATCGTGTTTGTCCCGGGACAAAAAAAATCCCACAACAGATGTTAGAGTCGCCCCTATCATCACTGAACAAACAGCCAAATTGGGCAGATTTGCTAATTATTTACAGAATTGAGTCTCAAGGGGCTACTGCTTTTGTGGGCGACGCAGACTCAATTTGTCCCGGACAGAGAGGTTTTGTGTTTCAACACTGGTTGAGCGTGTAGGTCAAataaatcagcagtttgcttaTATTGTTTCGTTTTTGAAGTATTTGTGGATAAACAAGAAATGACGCGTTGCTTATATCGTGCCAAGCATCGCCTATATAGCATATTAAGTGTGAGGAGAAATACGATATGAGATGGGAATTATGAAGTATATTGCCAGAGGCGGTGATGAAGGACTGGCTGTGATTGGATTGTTGTGGTTGATATTCTggcttcttaaaaaaaaaaaaacgaaaaaaaaaaaaacggaacaAATGGGATTTAAGACTAATATTTAAAACCTCATAGAAAAATGTAGacctttgtgtgtctctttgccTCCAGATGTTGCCTCTGTGATGAGACAGTTTTGTGACTCTATCATTGCATAATACAGTACACGACACAACAGTAGAGACAAAAGCCCAGGCCTGGTTTTGCTGGATGTTAGAGGCGTGCATGTTAACGagcatgcagcagcagcagcagcagcaggaaagGGGCTGCAGACAGTGTAGATAGAGAGACTGACAGAGTTTCTTGGTGCTGTTCAGAGTCAGGGAGATGTATCCTTGGGCTTTTTGTCCTGCCTGTCACTTGGTGCCATTGTGATCTTTGCTGCACACGTTGTATCCCATATGGGCAGCTGGGCTCGGACAAGGAGAAAAGGATCTCTCACAAACCCCAAATTGTATCAAGCTTTCAAATAAAGCATTGTTGTCTCTCAAAGAAAAACGAATTAAAAATTCGTGCTATATCTATtctggtaaaaaaagaaaaaagaagcccCATTCACAGATAACAGGGAGTCCTTCTTCCTTGATAGAGCTATGCCAACAACAGCCTTCTCAtttctctttcccctctctcccccgtTCTCCAGAGTGAAAGGCGGATTATTGTCTGTCCAAAAAAAGTCGCTCGTCACAGcgcaaaaaaactatttttaataCCAGACAGTGTTCTTCCTTATTTGCTTTGAGTCCCGCTGGTATGCGTAGGCCTGTTTCTAAAATAGAATTTGTTTTATGGATTTCCGCATCAGGTGTAAAACCGAGCTGCTGCGAACATTCCAAAGATTGGATTTCACAAAACCTTTCCTGGATTTTGCTGTAAATTAGCCTATACCAAGACGCTTTTCAAACTGGTAGCAATTACAGAATATGCCAATAGTAAGGTTAATTAATCTAAGAGGTAAATGTTGAAGCTTCCATTTGCATTCTAATTTCATTGTGTGTCCGATGATCTGAAAGTGATGCAGATGTTTTTTTCATGGGAACCAAAACTGGTGATACTGGCAGGTGTTTGGTGGACTAATGCGCCAAGATTGACTGCCGTTGGAAAATTTGAATTTATAAGCCATGAAAATGgctcttttatttctaaatgtcATATTTTATTATGCATTCATATTTATAGatcttttgtattttattataccTTTTACAAAGCAACCCCCTTTAAATCTAAAGCACTCTGGGCCTGTTTGTCCCCAAatttattttagatttaaacacatttttaggtcaaccccccaaaaaaatggaTTTGTGCATCCAGTCACGCTCTGTTGTGTTTGCGTCAAAACagctgcaaaataaaaaaatatcaccTTTATCAGCCTTTATGGTAAACTTTTACGGTGAACAATTTTCGCTTTGCAACCGTATTTTGTCATTAACGCACCAGAAAATTATACCACCCCTCTACCAGCTCAGCAACAGGGTCAGATTTATCGGAAATTGCTTTTGGCTGCTTGAAGGGATAAAACAGGCGACATTAAAACAAGCATCTTGGCATGCAGCATAGTTCAACCTGCGTGGATAACACTATTATATACCTTGGAATACAATACTTGAGGAAATATGCACTTGGGACACCATGGATCTTCGTCATCCTGCCCATTTGAACCTCGACATGAATCATTTTTCTATCGTGCACATCGCCAAATAAACGAGGATTTCAAAGCTGTAATAAGCGGTGCTTTTCATTTAAAGGAAGCTATCTGGGTTTTATTGCCTTAAAGGAGATCCAGATTAGATTCGCCACAGTGCCGATATTAAAGAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278477 lncRNA upstream 13394 24157200 ~ 24157453 (+) True G205630
TU278439 lncRNA upstream 127936 24042572 ~ 24042911 (+) True G205592
TU278435 lncRNA upstream 128370 24026975 ~ 24042477 (+) False LOC120548718
TU278436 lncRNA upstream 128370 24026975 ~ 24042477 (+) False LOC120548718
TU278437 lncRNA upstream 128370 24026975 ~ 24042477 (+) False LOC120548718
XR_005637380.1 lncRNA downstream 126658 24308129 ~ 24316723 (+) True LOC120549384
TU278517 lncRNA downstream 147642 24329113 ~ 24355916 (+) False ralgapa2
TU278535 lncRNA downstream 296549 24478020 ~ 24478375 (+) True G205674
TU278673 lncRNA downstream 572746 24754217 ~ 24755481 (+) False mgst3b
TU278675 lncRNA downstream 575852 24757323 ~ 24766129 (+) True G205786
XM_039785092.1 mRNA upstream 145901 24022703 ~ 24024946 (+) True foxa2
XM_039785698.1 mRNA upstream 158558 23974227 ~ 24012289 (+) True prkd3
XM_039785699.1 mRNA upstream 158558 23974227 ~ 24012289 (+) False prkd3
XM_039785697.1 mRNA upstream 197296 23966261 ~ 23973551 (+) True mocs3
XM_039786165.1 mRNA upstream 394889 23751263 ~ 23775958 (+) False tfb1m
XM_039785343.1 mRNA downstream 14695 24196166 ~ 24199536 (+) True nkx2.4a
XM_039785344.1 mRNA downstream 14695 24196166 ~ 24199536 (+) False nkx2.4a
XM_039785615.1 mRNA downstream 147676 24329147 ~ 24443959 (+) True ralgapa2
XM_039785620.1 mRNA downstream 147677 24329148 ~ 24447362 (+) False ralgapa2
XM_039785612.1 mRNA downstream 147677 24329148 ~ 24445041 (+) False ralgapa2
TU278270 other upstream 635177 23531063 ~ 23535670 (+) False si:ch211-195o20.7
TU278034 other upstream 1324439 22833987 ~ 22846408 (+) True G205294
TU277824 other upstream 1642098 22525161 ~ 22528749 (+) False srp14
TU277801 other upstream 1804947 22363688 ~ 22365900 (+) True gchfr
TU277798 other upstream 1804995 22363688 ~ 22365852 (+) False gchfr
TU278518 other downstream 147642 24329113 ~ 24355916 (+) False ralgapa2
XR_005637306.1 other downstream 147676 24329147 ~ 24443950 (+) False ralgapa2
TU278672 other downstream 576390 24757861 ~ 24759494 (+) True mgst3b
unassigned_transcript_1160 other downstream 895312 25076783 ~ 25076864 (+) True trnas-gcu_19
TU278848 other downstream 967980 25149451 ~ 25153296 (+) False LOC120549233

Expression Profile