RNA id: XM_039785699.1


Basic Information

Item Value
RNA id XM_039785699.1
length 4970
RNA type mRNA
GC content 0.48
exon number 19
gene id prkd3
representative False

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 23974227 ~ 24012289 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCATCGGAGGCGCCATTGCTTCACATCGCTGTAGTTCAAGTTTTCCTCCCCACACATGGAAAGTCAGTTATGCGGAGAAAATAAGAGGACTCCAAGCCCCAGCGACGGTCGCTGCTCTTTTTCTCGTCAAGCAGGGGGAGTAGACACAGCTGGAGGGAATAAAGATGCGCATGAATTTACAATCTGGAATAAAAgataagagaaaataaatggaCGGCTCGGTTAGTCTCAGCTCGCCTGTATGTAAAACTAATGTCGGAATTTGTTACATGTAAACTACGACGCTGCGCTTTTGTGTGTGACTTCCATAAAGTGCAGAATTTGAAACTTCAGACTCCGCTTTCCTCAGTTGATGGAGTTACAAAGTTTCTGCAGTAAACTCACAATGGGACGAAAAGCGCCCTTCGCTGACTGTGAAGGCTTCCTGTGGTCAGAATGGATTACTGACTTCAGTAAGGAGAAGGAGCGCCACTTCAGGATATGATGCTCTTTGCAGTGAGACGTCTGCGGATTGTTCACAGACTTTTTCTCCATCGCCTGCCCATCTAGTGAATGAGTGTGTGTTCTGTGAGCTCAGGTGGGCGGATCACCTATTACCCCTCTTAATTCATGAAAAACAATGTCACTTTGATAAAATCATATATTGCTGACTCGCTACCACTGATGAAGACCAAAGATTTCCCCGACCAAGAGTCAACTGTGCTTTTTTCTGCCAGCCTTCACTAAAACCTCCACTATTCAGCATTCCACGTTGCCATTGGAAGAAACCCAATGTCTGCCTCCTCTCCCCCATCCTTACCTCGAGCCTTCCTCCACTCTCTCCATCCGCACCACCCATCCTCGTCGTCCGCCCCGTCGCCGAGCCCGCCCGGACTGCTGTACACACGGCTGTCCAACGGCAGTCACAGCGTTCCCAGCCCCACTAACTCCCGCAGCTCTTTCCATGGGGTGTCCTTCCTGCTGCAGATAGGACTGACCAGAGAGACGGTGAACCTGGAGGCCAGTGACCTGTCGCTGTCTTCTGTCAAGGACCTGGTGTGCTCCATAGTGGACCAGAAGTTCCCAGAGTGCGGCTTCTTTGGCATGTATGACAAGATCCTGCTGTTCCGCCACGACTTAAACGACGAGAACATCCTGCAGAGGCTAACCTCGGCAGAGGACATCCATGAAGGAGACCTCATTGAGGTGGTGCTCTCTGCTCAAGCCACAGTTGAAGACTTCCAGATACGACCCCATGCCCTTTATGTCCACTCCTACAAGGCCCCCACCTTCTGCGATTACTGCGGGGAGATGCTATGGGGTCTCGTCCGGCAGGGGCTCAAATGTGAaggATGTGGGCTAAACTACCACAAGCGCTGCGCCTTTAAGATCCCAAATAACTGTTCTGGTGTCCGGAAAAGGCGATTGTCCAATGTCTCACTGCCTGGCCCCTCCCTCTCCGTCCCCCGACCGGCACCTCCCGAAAATGCCGTGGTCATCCTGGACGAGAGGTCCCATCAGGAGGCAGGGAAGCGGATCCTGTCCTGGAGTGGCAGGCCTATCTGGATGGAGAAGATGGTGCTGGGGCGGGTTAAGGTTCCACACACCTTCGCCATTCACACCTACACTCGTCCCACTATCTGCCAGTACTGCAAGCGTCTGCTCAAGGGTCTCTTTCGCCAGGGCATGCAGTGTAAAGATTGCAGATTTAACTGCCATAAGCGATGTGCTTCAAAGGTACCTAGAGACTGTTTGGGGGAGGTGGACTTCAATGGAGAGCCAGCCAGTCCTGGCCCGGACTCGGACACTACCATGGATACTATGGAGGTGGACAGTGGCGACATGGATGGCGGCAGAGGACTGGACGACCCAGAGGAACCCTCCACTCCAGATGAGAGGATGTTCGACATGGATTCTCCCTTATTGGATCGAGAGAAGGACGAAGAGCCGATCAAGACAATCAGcCCTTCCACTAGCAGCAACATCCCTCTGATGCGGGTGGTCCAGTCCATCAAACACACCAAGAGGCGGAGCTCCACTGTGGTGAAGGAGGGCTGGATGGTTCATTATACGAGCAGGGACAACCTGCGGAAGAGACACTACTGGAGGCTGGACAGCAAGAGTCTGAGTCTCTTCCAGAATGACACCGGAGCCAAGTTCTACAAAGAAATCCCTCTGTCCGAGATCCTCCAGGTGGAACAGTCCAGAGACTACAGTAATCTGGCCCAGGGCAGCAACCCACACTGCTTTGAGATCATCACAGCCACCATGGTCTACTATGTAGGGGAGAACAACTGCAGTCACTACCACAGCCCCTCTCTGGCTGCCTCAGGAGTCGGTATGGATGTGGCTCAGGGCTGGGAGAAGGCCATCAGACAGGCTCTGATGCCTGTCACCCCTCAGCCCAGTGTGGCCAGTGCTGCTGGCCAGGGCAAAGATCATAAAGAGCTTTCCATCAGCATATCTGTGTCCAACTGCCAGATCCAGGAGAATGTGGATATTGCCTCAGTGTACCAAATATTCTCTGATGAGGTGCTGGGATCTGGCCAGTTTGGCATTGTGTATGGAGGCAAACACAGAAAGAGCGGCAGAGATGTGGCCATCAAGGTGATTGACAAGATGAGATTTCCTACTAAGCAGGAGAGCCAGCTAAGGAATGAGGTGGCCATATTACAGAATCTGCATCACCCGGGTATCGTCAACTTGGAGTGTATGTTTGAGACACCGGAGCGGGTGTTTGTTGTCATGGAGAAGCTGCACGGCGACATGCTGGAGATGATTCTGTCCAGCGAGAAGAGCAAACTGCCTGAACGAATCACCAAGTTCTTAGTCACACAGATCCTGGTGGCCTTGAGACATCTGCACTTCAAAAACATTGTTCACTGTGACTTGAAGCCCGAGAATGTACTACTGGCCTCCGCAGAGCCCTTTCCTCAGGTAAAGCTGTGTGACTTTGGCTTTGCCCGTATAATTGGCGAGAAGTCGTTCCGGCGGTCTGTAGTTGGCACTCCGGCCTACCTAGCTCCAGAGGTGCTGCGCAGTAAGGGCTACAACCGCTCCTTAGACATGTGGTCAGTGGGAGTTATTGTGTACGTCAGCTTGAGCGGGACATTCCCTTTTAATGAGGACGAGGACATTAATGACCAGATCCAGAATGCTGCCTTCATGTACCCACCTACGCCCTGGAAGGACATCTCTGCAGAGGCCACAGATCTGATCAACAATCTTCTCCAAGTCAAGATGAGGAAGAGGTACAGTGTGGACAAGTGTCTCAGCCATCCCTGGTTACAGGACTATCAAACATGGCTGGACCTCAGGGAGTTTGAGACGCGGCGAGGCGAGCGCTACATCACCCACGAGAGCGACGACGCACGCTGGGAGGAATACGCAGACGAGCACAGTCTCGTTTACCCCAAACACTTTATCATGGCTCCCAACCTTGATGACATGGAAGAGGACCCCTAGTGGTACAGGGGACTTACTACACCACATGTATTAAAGGACAAGGATTGTCACAGGAACTTTTTTCATGAAAGCTGTGGGAGCGGCGTATTTTCCCTCCAGAACTGTTTGTTGTGGAAACGGATCATAAGCCGATCAGGTGGAGAATCACCCTCCAGAGGCTTTCAAAGTGGGGGAAAGCCAACAGAATTTGTAGCATGATGCACAACTGCTACAAGCAGTACGCAGGTAGAGATGCGTGCCACAGAAACGCATTAAGAAACTGTCCGGAGAGAAGAGTGTTCGTCTTCTGTTTGCACGATATCAAAACATTCCATGAACTTACTCAAGTTTGGTTCATTCGGTCACAAACCAAAACAAGGTGAACTTAATAGTTTAGTTGTACACACAATTTTGGATAACTTTGAGTAATAATATGACTCTGTTCTTTATCTTTATGTGAGAGAAGACATCGGAGAGCGAGAGCTTACCCCAGGAGTAAAGGGCACTTTTCACAAGGGATTTACAGTCTGAGGATTTAAAACGTTGAGTTTTGTTCTCATTTCCCAACTGTTTGTGAGACTGTCCTTTGGTATGAAACTGGAACTATCACatatatttgtatgttttaaaaaaaatatatatttgtggtAGATTTTTGCACTATTGCAATTGAACATAGCATTTGAATAGAAACACTATTCGCTGCTACAGAGAGCATCCAGTCTAGGTGCAGAGTTTTACCCAGAGATAATCAGCAGAAAGTTGATGCAACTCGCGCGGTATTGGCTGCTTTGTCaccatttattttaaacaaaccTCTTCAGGTATTTCCCACCAACATGTCATTAGAGTATGATCTGTTACTGGCAGCTAATAGTGTGCAAGTTTGATCAACTTTCGCCTAGAGACAGTGACCAACAGACCCTGACCAAAtatgttcattttaatgtttccaAACCTTTTTTCTAAATTTACATGAATTTCTTGACTCACTGAATTGTCAGTAAATGCAATAATGGAGccgttattttttttctgttcaacATGAGGCTAAAACAACATGGACTCTATGTATGTTAGAGcatcatgtttctgtgtatcTTTTCCTGCAGTATTCTTGAATGTGACTTTTTAAGCACTCCAATTCTGGattcaatgtgtttttgatGCTCCTTAGGTAGGTAAGTGTTGCATGGCCAGAGGCGGCCAACCGAGGTTTTACATAGAACAAAATATTGGTGTCAGTTTTCATTGTTTATTATGTAGTCTGGACCGTTGCAACACCCCTTTTTGTCTAGACAGTAGACACAGTAAAAACTAGGTATACTTAACAGTTTGGTTCACATGGGAGTTTATTGTACTACAGTTTTGTAGTTTTCTCTGTTGGTGTGTTTTGGGAGTatgttcctgtttcctgttgtcctcttcctgtctttgttgCCGCTGGATTGGCAGGTGTCAGTGTTTTGTATATTTCAGTACATACCAATGGAATAAAAACTCATCTTCTCAACTGAGAATTAAACGTTTTCTTCAAGCTCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278428 lncRNA upstream 8387 23963296 ~ 23965840 (+) True G205584
TU278353 lncRNA upstream 154879 23781746 ~ 23819348 (+) False G205527
TU278352 lncRNA upstream 188210 23781746 ~ 23786017 (+) True G205527
TU278351 lncRNA upstream 190148 23781746 ~ 23784079 (+) False G205527
TU278273 lncRNA upstream 481005 23492983 ~ 23493222 (+) True G205477
XR_005637264.1 lncRNA downstream 14645 24026934 ~ 24042448 (+) True LOC120548718
TU278435 lncRNA downstream 14686 24026975 ~ 24042477 (+) False LOC120548718
TU278436 lncRNA downstream 14686 24026975 ~ 24042477 (+) False LOC120548718
TU278437 lncRNA downstream 14686 24026975 ~ 24042477 (+) False LOC120548718
TU278439 lncRNA downstream 30283 24042572 ~ 24042911 (+) True G205592
XM_039785697.1 mRNA upstream 676 23966261 ~ 23973551 (+) True mocs3
XM_039786164.1 mRNA upstream 198269 23751256 ~ 23775958 (+) True tfb1m
XM_039786165.1 mRNA upstream 198269 23751263 ~ 23775958 (+) False tfb1m
XM_039786167.1 mRNA upstream 198269 23751268 ~ 23775958 (+) False tfb1m
XM_039785184.1 mRNA upstream 404385 23553636 ~ 23569842 (+) True LOC120548746
XM_039785092.1 mRNA downstream 10414 24022703 ~ 24024946 (+) True foxa2
XM_039785002.1 mRNA downstream 158558 24170847 ~ 24181471 (+) False nkx2.2a
XM_039784999.1 mRNA downstream 161590 24173879 ~ 24181471 (+) False nkx2.2a
XM_039785003.1 mRNA downstream 163624 24175913 ~ 24186610 (+) False nkx2.2a
XM_039784998.1 mRNA downstream 163624 24175913 ~ 24181471 (+) True nkx2.2a
TU278270 other upstream 438557 23531063 ~ 23535670 (+) False si:ch211-195o20.7
TU278034 other upstream 1127819 22833987 ~ 22846408 (+) True G205294
TU277824 other upstream 1445478 22525161 ~ 22528749 (+) False srp14
TU277801 other upstream 1608327 22363688 ~ 22365900 (+) True gchfr
TU277798 other upstream 1608375 22363688 ~ 22365852 (+) False gchfr
TU278518 other downstream 316824 24329113 ~ 24355916 (+) False ralgapa2
XR_005637306.1 other downstream 316858 24329147 ~ 24443950 (+) False ralgapa2
TU278672 other downstream 745572 24757861 ~ 24759494 (+) True mgst3b
unassigned_transcript_1160 other downstream 1064494 25076783 ~ 25076864 (+) True trnas-gcu_19
TU278848 other downstream 1137162 25149451 ~ 25153296 (+) False LOC120549233

Expression Profile