RNA id: XM_039786165.1


Basic Information

Item Value
RNA id XM_039786165.1
length 1870
RNA type mRNA
GC content 0.48
exon number 8
gene id tfb1m
representative False

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 23751256 ~ 23775958 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTATAGGGAAATGTAAGGGAGAAAACGGCACCGGTGAGAAACTTGACCTGAACGATGGCTGCCTCAGGGAAACTGGCGTCTTTCCGTCTGCCTCCCTTGCCTACTGTAGGCGAGCTCATAAAGCTGTACAACCTGCGAGCTGAGAAACAGCTGTCCCAGAACTTTCTGTTGGACTTGAAGCTCACAGACAAAATAGTGCGTCAGGCAGGCAGTTTGAGGGATGCCCATGTGTGTGAGGTGGGTCCTGGTCCCGGCGGTCTCACCCGCTCCATTGTCAATGCCGGGGCGGCGGATGTGCTTGTGGTGGAGAAGGATACCCGCTTCATCCCAGGACTGAAGCTGCTGTCTGAGGCAGCACCAGGGAGGTTGAGGATCGTCCACGGGGACATACTCACCTACAGGATGGACCGAGGATTCCCAGAAACTATCTCTAAGCCATGGGAGGGAGATCCACCAAACCTTCACATCATAGGGAATCTCCCATTCAGCGTCTCCACTCCCCTCATCATTAAATGGCTAGAGAACATAGCCAACAGAACAGGGCCCTTCATCTACGGACGCACCCGGCTCACCCTCACTTTCCAGAAAGAGGTCGCAGAGAGGCTGACAGCCAGCACAGGCAGCAAACAGAGAAGCCGTCTGTCCATTATGGCCCAGTATCTCTGCACAGTCCGAAACTGCTTCACCATCCCCGGACGGGCCTTTGTCCCTAAACCAGAGgtggatGTAGGAGTAGTTCACTTCACCCCTCTGGTTCAGCCCCAGATCCAACAACCCTTCAAGCTGGTGGAGAAAGTCGTCCGGAACATTTTCCAGTTCCGCAGGAAGCACTGCCATAAAGGAGTAGAAAAGTTGTTTCCTGAGGCATGTCGTGTAGAGCTGACACAGGAGATGATGCAGAAGGCAGACGTGGACCCCACTCTACGCCCTACAGATCTCACCATACCCCAGTTCAGGGCTTTAGCGGATGCCTATGCTCATTTCTGCACCCATGAACCCAGTCTCCTCAGCTATGAGTTCAGAGAGGAGCTCAGACTGAAGCACCTCGCCAGGCAAAGAAACAAACCAGTGGACACATTTATGGACAAGCCAACCGGCACACCACCCAATCCTCACTAATAGCCTCTGTTAGCACAGAGAAACAACAGACTGCTCTTAGCCTTGACATTTCCACTGGCATAGGCAtgcatttttaaaaactttttccCGGAGCAATAGGTAACCTGGTATACATGAAATACTGGAACAGAGACAAGAACCACAAGGCCATAAAGATCCTGGGTGGGTTGAATCAGTTCCAAGACCTTGCTCCAGGATAGGACAGCTCAAAGCAGTCATGTGTAGTTACCCACAGTAGCTTTAACTGTGAGTATCTCTGTATTTCCCAATTCTTACTTCAGATCCAAGTCGCATAAACCGTCAGTGTTCATGGTGATTTAGAAAATGGGAACAACATGGCAGCACTGGGTATCCAGGCCGTTTTTTCCCTCCTCCCTATGTACTGTATTGCTTAGTCACTTGGAAGACAGAGCTTAAAGGGAGGAGGAAAGTGGTGGGAATTTGTTAGCTCTAGAAATACGTTTGTTGTATTAAATGAAGAGGAATCCACTGGTAATGcctatatttatatatgaaaaaaatctGCAAACCCAATCTGCAATTGATCCAAAATAATCAAATCTAACCCTTTTCAAAATGCAAAATCATAAATGTTAGTGGAGGAACTGTTGTTACATTTCTTTTACAGAATACAGCATGTATGTTAAATGGATCTGACCACAGTGTTGTTTTATAGGGTTTTATGTcaataaaagtgttgtttattttgttgttgtggttgttggaTTGAATATTATGGCtgctatttcat

Function

GO:

id name namespace
GO:0031167 rRNA methylation biological_process
GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278273 lncRNA upstream 258041 23492983 ~ 23493222 (+) True G205477
TU278258 lncRNA upstream 404322 23344727 ~ 23346941 (+) True G205464
TU278257 lncRNA upstream 406597 23344280 ~ 23344666 (+) True G205463
TU278254 lncRNA upstream 409524 23340579 ~ 23341739 (+) True G205461
TU278133 lncRNA upstream 747647 22979086 ~ 23003616 (+) True G205359
TU278351 lncRNA downstream 5788 23781746 ~ 23784079 (+) False G205527
TU278352 lncRNA downstream 5788 23781746 ~ 23786017 (+) True G205527
TU278353 lncRNA downstream 5788 23781746 ~ 23819348 (+) False G205527
TU278428 lncRNA downstream 187338 23963296 ~ 23965840 (+) True G205584
XR_005637264.1 lncRNA downstream 250976 24026934 ~ 24042448 (+) True LOC120548718
XM_039785184.1 mRNA upstream 181421 23553636 ~ 23569842 (+) True LOC120548746
XM_039787070.1 mRNA upstream 198681 23530908 ~ 23552582 (+) True si:ch211-195o20.7
XM_039787071.1 mRNA upstream 222777 23517852 ~ 23528486 (+) False LOC120549876
XM_039787072.1 mRNA upstream 222777 23518177 ~ 23528486 (+) True LOC120549876
XM_039786762.1 mRNA upstream 795564 22951191 ~ 22955699 (+) True LOC120549681
XM_039785697.1 mRNA downstream 190303 23966261 ~ 23973551 (+) True mocs3
XM_039785698.1 mRNA downstream 198269 23974227 ~ 24012289 (+) True prkd3
XM_039785699.1 mRNA downstream 198269 23974227 ~ 24012289 (+) False prkd3
XM_039785092.1 mRNA downstream 246745 24022703 ~ 24024946 (+) True foxa2
XM_039785002.1 mRNA downstream 394889 24170847 ~ 24181471 (+) False nkx2.2a
TU278270 other upstream 215593 23531063 ~ 23535670 (+) False si:ch211-195o20.7
TU278034 other upstream 904855 22833987 ~ 22846408 (+) True G205294
TU277824 other upstream 1222514 22525161 ~ 22528749 (+) False srp14
TU277801 other upstream 1385363 22363688 ~ 22365900 (+) True gchfr
TU277798 other upstream 1385411 22363688 ~ 22365852 (+) False gchfr
TU278518 other downstream 553155 24329113 ~ 24355916 (+) False ralgapa2
XR_005637306.1 other downstream 553189 24329147 ~ 24443950 (+) False ralgapa2
TU278672 other downstream 981903 24757861 ~ 24759494 (+) True mgst3b
unassigned_transcript_1160 other downstream 1300825 25076783 ~ 25076864 (+) True trnas-gcu_19
TU278848 other downstream 1373493 25149451 ~ 25153296 (+) False LOC120549233

Expression Profile