foxa2 (foxa2)


Basic Information

Item Value
gene id foxa2
gene name foxa2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 24022703 ~ 24024946 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039785092.1
AGGCTTGCCTAGCGCACAGAGCTATATCACAGCGTTAACAGGCAGCACGGAGCGTCATTTGAACTCCAGTCACTGACAGACGCATTTCACGGCTGGCTCCATAAGACACACATCAACGCCAGTCCTTGACGAAGGGACACACCGACGACCTAAATACACTCAGTGGTCCCCAGTCACCTGCTATTAGAGAGACTTTCTGCTTTTCCCCTGCTGGGAGACGCTTTGTAAAAGTCCTCCATGATGCTTGGAGCAGTTAAAATGGAAGGACACGAACACACCGACTGGAGCACCTACTACGGAGAGCCCGAGTGTTACACCTCGGTTGGCAACATGAACACAGGCCTGGGAATGAACTCTATGAATTCCTACATGAGCATGTCCGGCATGGGCACCACTGCCAACATGACAGCCAACTCCATGAACATGTCATACGTCAACACGGGCATGAGTCCCTCCATGACCGGCATGTCACCGGGCACCGGAGCCATGAACGGCATGGGCGCAGGCATGACGGCCATGAGCGCAGCCCTGAGCCCTAGTATGAGCCCCATGACCGCGCAGCCCGCATCTATGAACGCCCTGACATCCTACACCAACATGAACGCCATGAGCCCTATGTACGGACAGTCTAACATCAACAGGTCCAGAGACCCCAAGACCTACCGCAGGAGCTACACGCACGCAAAGCCCCCGTATTCCTACATTTCCCTCATCACCATGGCCATCCAGCAGTCTCCCAGCAAAATGCTGACACTGGCCGAGATCTACCAGTGGATAATGGACCTCTTCCCTTTTTACCGACAGAACCAGCAGCGCTGGCAGAACTCCATTCGCCACTCGCTGTCGTTCAATGACTGTTTCCTCAAAGTGCCCAGGTCGCCGGATAAACCCGGGAAAGGCTCCTTTTGGACTCTCCACCCGGACTCTGGGAACATGTTTGAGAACGGCTGCTATCTGAGGAGACAGAAGCGCTTCAAGTGCGATAAGAAGACGAGCAAGGATAGCGGGCGCAAAGGGGGAGATGGCGGCTCCTCTAACAGCAGCTCGGAGAGCTGCAACGGAAACGAGTCCCCGCACTCCAACTCCTCCGTCAGCGAGCACAAAAGGTCCCTGTCGGACATGAAGACGAGCCAGGCCCTGAGCCCGGAGCACGCCGCCGCCTCCCCGGTGTCGCAGGGCCAGCACCTCATGTCTCAGCATCACTCTGTCCTTGCGCACGAAGCGCACCTGAAGCCGGAGCACCACTACTCCTTCAACCACCCCTTCTCCATAAATAACCTCATGTCTTCGGAGCAGCAGCATCACAAGATGGACCTAAAGACTTACGAGCAGGTGATGCATTACTCTGGCTATGGCTCCCCTATGGCCGGGGCTCTTTCCATGGGCTCCATGGCGGGGAAAGCCGGTCTGGATTCTTCAACCATACCTGAAACAACTTACTACCAAGGCGTCTATTCCAGGCCAATCATGAACTCCACATAAACTCTTCAGCCATCCATCCGATGTGGACTTTCTTCCCCTTTCAATTTGtacatttgtaaaataaatatagagTTTGTGTA

Function

symbol description
foxa2 Enables transcription cis-regulatory region binding activity. Acts upstream of or within axial mesoderm morphogenesis; endoderm development; and nervous system development. Predicted to be located in nucleus. Is expressed in several structures, including central nervous system; digestive system; endoderm; mesoderm; and swim bladder. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human FOXA2 (forkhead box A2).

NR:

description
hepatocyte nuclear factor 3-beta

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K08035 FOXA2, HNF3B; forkhead box protein A2, hepatocyte nuclear factor 3-beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039785092.1 True 1562 mRNA 0.54 2 24022703 24024946

Neighbor

gene id symbol gene type direction distance location
prkd3 LOC103353740 coding upstream 10414 23974227 ~ 24012289 (+)
mocs3 mocs3,LOC103136035 coding upstream 49152 23966261 ~ 23973551 (+)
tfb1m tfb1m coding upstream 246745 23751256 ~ 23775958 (+)
LOC120548746 NA coding upstream 452861 23553636 ~ 23569842 (+)
LOC120549876 NA coding upstream 494217 23517852 ~ 23528486 (+)
nkx2.2a nkx2-2,LOC100709604,LOC103458615,LOC103136030,LOC103390882,LOC101157822,LOC102307404,LOC107392558,LOC103359019 coding downstream 145901 24170847 ~ 24186610 (+)
nkx2.4a LOC102798947,LOC102306385,LOC100709876,LOC101467433 coding downstream 171220 24196166 ~ 24199536 (+)
gale gale coding downstream 443583 24468529 ~ 24472456 (+)
zbtb8a zbtb8a,LOC102800197 coding downstream 448098 24473044 ~ 24476916 (+)
hmgcl hmgcl coding downstream 452425 24477371 ~ 24482530 (+)
G205584 NA non-coding upstream 56863 23963296 ~ 23965840 (+)
G205527 NA non-coding upstream 203355 23781746 ~ 23819348 (+)
G205477 NA non-coding upstream 529481 23492983 ~ 23493222 (+)
G205464 NA non-coding upstream 675762 23344727 ~ 23346941 (+)
G205463 NA non-coding upstream 678037 23344280 ~ 23344666 (+)
LOC120548718 NA non-coding downstream 1988 24026934 ~ 24042477 (+)
G205592 NA non-coding downstream 17626 24042572 ~ 24042911 (+)
G205630 NA non-coding downstream 132254 24157200 ~ 24157453 (+)
LOC120549384 NA non-coding downstream 283183 24308129 ~ 24316723 (+)
G205674 NA non-coding downstream 453074 24478020 ~ 24478375 (+)
si:ch211-195o20.7 LOC102076813 other upstream 470121 23530908 ~ 23552582 (+)
G205294 NA other upstream 1176295 22833987 ~ 22846408 (+)
srp14 srp14 other upstream 1493954 22525155 ~ 22528749 (+)
gchfr gchfr other upstream 1656803 22363664 ~ 22365900 (+)
LOC120549475 gpatch2l other upstream 2862417 21137212 ~ 21160286 (+)
ralgapa2 ralgapa2 other downstream 304167 24329113 ~ 24447362 (+)
mgst3b LOC106536548,LOC108237254,LOC107096417,LOC100690646 other downstream 729271 24754217 ~ 24759498 (+)
LOC120549173 LOC103365836,LOC101483368 other downstream 1072220 25097166 ~ 25149128 (+)
LOC120549233 LOC103365834,LOC101066181,LOC100705758,LOC102786033,LOC101484046 other downstream 1124505 25149451 ~ 25180207 (+)
LOC120549312 fbxo33,LOC102800092 other downstream 2790529 26815475 ~ 26832435 (+)

Expression


Co-expression Network