LOC120549384


Basic Information

Item Value
gene id LOC120549384
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 24308129 ~ 24316723 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637380.1
GCAGGGAGCTGAGGAGTTGCTGGCTAGGACCCAGCTACAGCTACGGCTAGCAAGGCCTCATCCCCAACGCCGGGCAACTGACGCATGACTACACAAGCCCAGGGCAGCTTGAAGGCTTTGGGTGCAGGGGAGTGGTCGGCTCCAGGGTTGATTCACGGCAACAGATATGGGAGTGAATGTCACCGCAGCCCCTCTCCAGCCCTCCAGGGCTGAGCCTCGCAGACGTCAAGTGTTAATTTAGGGTTCCTGCCGAGCgggagcctgtcagtggcgagGCTTGGAGAAGGGAGAGAGGCGATGTCTTTAAGATCATGGACATTAGCAGAGAAGACCAGAGAAGATCATTTTGAAAAACATGAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637380.1 True 362 lncRNA 0.56 4 24308129 24316723

Neighbor

gene id symbol gene type direction distance location
nkx2.4a LOC102798947,LOC102306385,LOC100709876,LOC101467433 coding upstream 108593 24196166 ~ 24199536 (+)
nkx2.2a nkx2-2,LOC100709604,LOC103458615,LOC103136030,LOC103390882,LOC101157822,LOC102307404,LOC107392558,LOC103359019 coding upstream 121519 24170847 ~ 24186610 (+)
foxa2 foxa2 coding upstream 283183 24022703 ~ 24024946 (+)
prkd3 LOC103353740 coding upstream 295840 23974227 ~ 24012289 (+)
mocs3 mocs3,LOC103136035 coding upstream 334578 23966261 ~ 23973551 (+)
gale gale coding downstream 151806 24468529 ~ 24472456 (+)
zbtb8a zbtb8a,LOC102800197 coding downstream 156321 24473044 ~ 24476916 (+)
hmgcl hmgcl coding downstream 160648 24477371 ~ 24482530 (+)
tmem54a NA coding downstream 198648 24515371 ~ 24519752 (+)
zgc:154055 mtmr9,LOC103359038 coding downstream 228419 24545142 ~ 24553250 (+)
G205630 NA non-coding upstream 150676 24157200 ~ 24157453 (+)
G205592 NA non-coding upstream 265218 24042572 ~ 24042911 (+)
LOC120548718 NA non-coding upstream 265652 24026934 ~ 24042477 (+)
G205584 NA non-coding upstream 342289 23963296 ~ 23965840 (+)
G205527 NA non-coding upstream 488781 23781746 ~ 23819348 (+)
G205674 NA non-coding downstream 161297 24478020 ~ 24478375 (+)
G205786 NA non-coding downstream 440600 24757323 ~ 24766129 (+)
LOC120549090 NA non-coding downstream 533256 24849979 ~ 24919202 (+)
G205847 NA non-coding downstream 674896 24991619 ~ 24991967 (+)
G205851 NA non-coding downstream 719012 25035735 ~ 25035950 (+)
si:ch211-195o20.7 LOC102076813 other upstream 755547 23530908 ~ 23552582 (+)
G205294 NA other upstream 1461721 22833987 ~ 22846408 (+)
srp14 srp14 other upstream 1779380 22525155 ~ 22528749 (+)
gchfr gchfr other upstream 1942229 22363664 ~ 22365900 (+)
LOC120549475 gpatch2l other upstream 3147843 21137212 ~ 21160286 (+)
ralgapa2 ralgapa2 other downstream 12390 24329113 ~ 24447362 (+)
mgst3b LOC106536548,LOC108237254,LOC107096417,LOC100690646 other downstream 437494 24754217 ~ 24759498 (+)
LOC120549173 LOC103365836,LOC101483368 other downstream 780443 25097166 ~ 25149128 (+)
LOC120549233 LOC103365834,LOC101066181,LOC100705758,LOC102786033,LOC101484046 other downstream 832728 25149451 ~ 25180207 (+)
LOC120549312 fbxo33,LOC102800092 other downstream 2498752 26815475 ~ 26832435 (+)

Expression


Co-expression Network