RNA id: XR_005637380.1


Basic Information

Item Value
RNA id XR_005637380.1
length 362
lncRNA type inter_gene
GC content 0.56
exon number 4
gene id LOC120549384
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 24308129 ~ 24316723 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGGGAGCTGAGGAGTTGCTGGCTAGGACCCAGCTACAGCTACGGCTAGCAAGGCCTCATCCCCAACGCCGGGCAACTGACGCATGACTACACAAGCCCAGGGCAGCTTGAAGGCTTTGGGTGCAGGGGAGTGGTCGGCTCCAGGGTTGATTCACGGCAACAGATATGGGAGTGAATGTCACCGCAGCCCCTCTCCAGCCCTCCAGGGCTGAGCCTCGCAGACGTCAAGTGTTAATTTAGGGTTCCTGCCGAGCgggagcctgtcagtggcgagGCTTGGAGAAGGGAGAGAGGCGATGTCTTTAAGATCATGGACATTAGCAGAGAAGACCAGAGAAGATCATTTTGAAAAACATGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278477 lncRNA upstream 150676 24157200 ~ 24157453 (+) True G205630
TU278439 lncRNA upstream 265218 24042572 ~ 24042911 (+) True G205592
TU278435 lncRNA upstream 265652 24026975 ~ 24042477 (+) False LOC120548718
TU278436 lncRNA upstream 265652 24026975 ~ 24042477 (+) False LOC120548718
TU278437 lncRNA upstream 265652 24026975 ~ 24042477 (+) False LOC120548718
TU278517 lncRNA downstream 12390 24329113 ~ 24355916 (+) False ralgapa2
TU278535 lncRNA downstream 161297 24478020 ~ 24478375 (+) True G205674
TU278673 lncRNA downstream 437494 24754217 ~ 24755481 (+) False mgst3b
TU278675 lncRNA downstream 440600 24757323 ~ 24766129 (+) True G205786
TU278702 lncRNA downstream 533256 24849979 ~ 24919202 (+) True LOC120549090
XM_039785343.1 mRNA upstream 108593 24196166 ~ 24199536 (+) True nkx2.4a
XM_039785344.1 mRNA upstream 108593 24196166 ~ 24199536 (+) False nkx2.4a
XM_039785003.1 mRNA upstream 121519 24175913 ~ 24186610 (+) False nkx2.2a
XM_039785002.1 mRNA upstream 126658 24170847 ~ 24181471 (+) False nkx2.2a
XM_039784999.1 mRNA upstream 126658 24173879 ~ 24181471 (+) False nkx2.2a
XM_039785615.1 mRNA downstream 12424 24329147 ~ 24443959 (+) True ralgapa2
XM_039785620.1 mRNA downstream 12425 24329148 ~ 24447362 (+) False ralgapa2
XM_039785612.1 mRNA downstream 12425 24329148 ~ 24445041 (+) False ralgapa2
XM_039785613.1 mRNA downstream 12425 24329148 ~ 24445041 (+) False ralgapa2
XM_039785619.1 mRNA downstream 12425 24329148 ~ 24445041 (+) False ralgapa2
TU278270 other upstream 772459 23531063 ~ 23535670 (+) False si:ch211-195o20.7
TU278034 other upstream 1461721 22833987 ~ 22846408 (+) True G205294
TU277824 other upstream 1779380 22525161 ~ 22528749 (+) False srp14
TU277801 other upstream 1942229 22363688 ~ 22365900 (+) True gchfr
TU277798 other upstream 1942277 22363688 ~ 22365852 (+) False gchfr
TU278518 other downstream 12390 24329113 ~ 24355916 (+) False ralgapa2
XR_005637306.1 other downstream 12424 24329147 ~ 24443950 (+) False ralgapa2
TU278672 other downstream 441138 24757861 ~ 24759494 (+) True mgst3b
unassigned_transcript_1160 other downstream 760060 25076783 ~ 25076864 (+) True trnas-gcu_19
TU278848 other downstream 832728 25149451 ~ 25153296 (+) False LOC120549233

Expression Profile