RNA id: TU278034


Basic Information

Item Value
RNA id TU278034
length 1513
RNA type TUCP
GC content 0.49
exon number 3
gene id G205294
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 22833987 ~ 22846408 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGAGAATTTGACCCCATGCTCACCTCCGGATAAGGGTCAGAAGTAAACTGGAAAGCCTTTAGGGAGAATCTTAGGGAATTGTCTGTCCGAGAGATGAACTGAGAGGCCCCTGGGTTGCTCTTGCTGTCCAGCAAACAGCAAATTGTCAATGATGGTGTATTTGAGTATATAGGCTTTAGAGCCACTGGATGGTGTAGCATGGCAGGTATTGATGTACAGCTTTCCACCATTTGAGAGATTAGGAGCAGAGACCTCGAAATTAATAGTCTCTCCCAGCTGGTACACCGGAGACTCGGCAGGTGTGCTCCATGAATCTAAGCATCAAATAGACCAGTttataaaacagacaaaaacattgcACTGGAAAGAAGCAGCTCTTAGTCACTACAATCCACAGTTGTTGAAACATACCATCCATCAACGCTATCTGGAAGTCAGTTGGACTTCCTTTCAGCATTTTACGCACAACGGCAGTTTCCCAGGTGGGCCGCACAATCCGACGATGCACATGGTTGCTCCTGGACAGGTTTTGGAGATtgttaaaaacacacatacgcgcacgcacgcacgcacacacacacgcacaactaACCTTTGATAACGGCATTCAATGTCGACAGTCATCCTTGGAAAACGCTCTCGCGAAGGCTCATAATGGAGCTCGTATTTGTAGAGCAGATACCCGTGGGACGACTGTCACAGAGAGGATCAGATATTATGATTTTAACATTAGGATTAAGAGTCTGAAAACGAATGACAAATCTTACCTCACGCACGGCATCACACGCTGTCAGGGGATACGTGAAAAGCAGGTCACTGTATGGTCTGAGAACCCCGTTGCTTTTGCAGGAGCTGCCTAATTTCAGCTCCTCTGTCTCTGCGCCCAGACCGTAGAAAGCTGGTTTGACCCGCACGACAACGTCAGACGCGGAGCAGGTTACAGAAACGTCTGGGAGGTAAGCGGAGTCCGACAGGATCTCTGCCTTGGGCTCCCCTGGACGCATGGGTCGAGGGGTCAGAGGAGGGTAAGCGGAGTCCGACAGGATCTCTGCCTTGGGCTCCCCTGGACGCATGGGTCGAGGGGTCAGAGGAGGGTAAGGCCTTTGGGAACTCAGTGGAGACATTGGAGAAATGCTGGTAGGTAGGACTGACCTCGGAGAGGATTTTCTGTAGTCTGTTCTTGACTGCTGAATTGATTGGGAGTTTGGAGTACCCGGTTTggaaactttttttcttctggtaAATGCAGATTCATGAGTGCCTATTGCACAGCTGAGGCAAAGTGATAAAACACTGCACAAAATATAGAGACGCCACATTTTCATCGCAAAAGACTGCTGTCCTTCTACCTTTCCCTTTCAATCTGCACGTGAAACCAGCACTCGGGCACAGCTGGAGCTAATTAGTGGCGACTCGGACGAATTGGCAGCCGGTTGGTGAACAGGCGAAGTTAAGCTTGGTTCAGTCTTCCAATGGAAGCAGTGGCAGGTTTCTTTGGTTGCACGTTATTA

Function

GO:

id name namespace
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637284.1 lncRNA upstream 2397 22830232 ~ 22831590 (+) True LOC120548825
TU278011 lncRNA upstream 53712 22777821 ~ 22780275 (+) True G205284
TU278005 lncRNA upstream 61261 22772486 ~ 22772726 (+) True G205279
TU277982 lncRNA upstream 114568 22717269 ~ 22719419 (+) False LOC120548706
XR_005637257.1 lncRNA upstream 114575 22717227 ~ 22719412 (+) True LOC120548706
TU278119 lncRNA downstream 75907 22922315 ~ 22922639 (+) True G205349
TU278113 lncRNA downstream 78845 22925253 ~ 22928705 (+) False G205345
TU278114 lncRNA downstream 78845 22925253 ~ 22928705 (+) True G205345
TU278109 lncRNA downstream 84522 22930930 ~ 22947866 (+) True G205344
TU278111 lncRNA downstream 88324 22934732 ~ 22935857 (+) False G205344
XM_039785325.1 mRNA upstream 39399 22788635 ~ 22794588 (+) True LOC120548821
XM_039785326.1 mRNA upstream 39399 22788635 ~ 22794588 (+) False LOC120548821
XM_039785323.1 mRNA upstream 39399 22788874 ~ 22794588 (+) False LOC120548821
XM_039785324.1 mRNA upstream 39399 22788957 ~ 22794588 (+) False LOC120548821
XM_039786081.1 mRNA upstream 69671 22751168 ~ 22764316 (+) False LOC120549279
XM_039786980.1 mRNA downstream 27183 22873591 ~ 22876714 (+) True LOC120549820
XM_039785121.1 mRNA downstream 43583 22889991 ~ 22905293 (+) True LOC120548707
XM_039786761.1 mRNA downstream 67303 22913711 ~ 22919265 (+) True LOC120549680
XM_039786762.1 mRNA downstream 104783 22951191 ~ 22955699 (+) True LOC120549681
XM_039787071.1 mRNA downstream 671444 23517852 ~ 23528486 (+) False LOC120549876
TU277824 other upstream 305238 22525161 ~ 22528749 (+) False srp14
TU277801 other upstream 468087 22363688 ~ 22365900 (+) True gchfr
TU277798 other upstream 468135 22363688 ~ 22365852 (+) False gchfr
TU277797 other upstream 468197 22363688 ~ 22365790 (+) False gchfr
XR_005637390.1 other upstream 1675292 21137313 ~ 21158695 (+) False LOC120549475
TU278270 other downstream 684655 23531063 ~ 23535670 (+) False si:ch211-195o20.7
TU278518 other downstream 1482705 24329113 ~ 24355916 (+) False ralgapa2
XR_005637306.1 other downstream 1482739 24329147 ~ 24443950 (+) False ralgapa2
TU278672 other downstream 1911453 24757861 ~ 24759494 (+) True mgst3b
unassigned_transcript_1160 other downstream 2230375 25076783 ~ 25076864 (+) True trnas-gcu_19

Expression Profile