RNA id: XM_039785121.1


Basic Information

Item Value
RNA id XM_039785121.1
length 1672
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC120548707
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 22889991 ~ 22905293 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagaggaacacaGAAAAGCTGAACATGGAATACAATGCGCAGGATGCTGAAGATGAGAGGAAATGTAAACAGCTTTTTCTGAATCTCTCTATAGCTCTCTCTTATCCTACAAcatcctgcatttaaaaaaagcatttagCTTAAGTGCCTCTGCAGCTGCAGCCAGAGTGATCTCATCATCTGAGTGCAACAAGACCGAATTCTAATTTTGCAAAGACAAGAGTGAGTAAGGATTTTGTGGGGAACTCCTGCCAAAGAGAGAAAGCGAGACAGGAAAAAAGAGCTATCAGGGTTCACACTGGGACTCAGTGTGGGTCTGAGGGAGATAGCAGAGAATTGAACCGAAGAGGTAAGATGAGTCTAAGAAACTGTCACACTCTGACCGCCAGTGGACAGGATTTGACCAGCAGCAGTAGCCGAGGCCCCTGGGAAGATGCTAGGGCAGTTTTGAAGCCCTCCACCCTCGCCAGGAAACCTAAACCACCCAAGCCAGAGAATGCTATCACCATTGGCGTGTCAGCACGAGTCCTCTTCAACATGGAGAAGGAGCAGCAGATCTACGAGCAGCAGGGCATGGAAGAGTACATCAAGTATCAGGTGGAGCATGAAACGCAGCCTTTCAGCCCCGGTCCTGCCTTCTCTTTTGTCAAGGCTCTGGAGGCGGTGAACACTCGACTGAGGGAGCTTTACCCCGAGAGCGAGGAGCTCTTTGATGTTGTGCTCATGACCAACAACCATGCATACGTCGGCCTAAGACTCATCAATACCATCAATCATCACAAGTTGTTCATCGAGCGCTTCTGTATGACAGGGGGAAACAGTCCCATAGGTTACCTAAAGGCCTACCACACTAACCTTTACCTGTCTGCTGATCCAGTCAAGGTTCGGGAAGCACTGGAAGAAGGTATAGCAGCAGCCACGATGTTCACCCCAGAGAAGATAACGGAAGTGTCGGAGACTCAGCTGCGTGTTGCCTTTGATGGTGACGCTGTCCTCTTCTCTGATGAGTCTGAGCGCATTTACAAGGCCCATGGACTGGACAAGTTCTTTGAGCATGAGAAGACACACGAGAACAAGCCTCTGGAccatGGACCATTGAAAGGTTTCCTGGAGGCTTTAGGAAAGCTGCAGAAGAAGTTTTATGGCAAAGGACAGCGCATGGACTGCCCCATCCGGACCTACTTGGTGACAGCTCGCAGTGCAGCCAGCTCTGGAACCAGAGCCCTAAAAACTTTGCGCTCATGGGGTCTGGAGATCGACGAGGCTCTCTTTTTGGCAGGGGCACCCAAGGGCCCCATGCTTGAGAAGATTAGGCCCCACATTTTCTTCGATGACCAGATGTTCCACGTGGAGGGGGCCGCTGAAATGGGGACAGTAGCGTGTCACGTGCCCTATGGGATAGCTCAGAGAATTACCAAGAAAGGGAATAATGACAAGGACGCTTCTTCAGCACCCCAAGAATCCTAAACGTCACTGAGACTAAAGGGTTAGCAGCTGAGAGAATGAGGTTGTCATTATAAAGCAATGTGATCATCAAATCACTTCTTTCATTAGCAGTTAATGACATGTCAGCTCCAGGGGTTATTCCATTGATTGTTACATTATCAGTTAAGAAAGAGGTAC

Function

GO: NA

KEGG:

id description
K01081 E3.1.3.5; 5'-nucleotidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278029 lncRNA upstream 45605 22832052 ~ 22844386 (+) True G205293
XR_005637284.1 lncRNA upstream 58401 22830232 ~ 22831590 (+) True LOC120548825
TU278011 lncRNA upstream 109716 22777821 ~ 22780275 (+) True G205284
TU278005 lncRNA upstream 117265 22772486 ~ 22772726 (+) True G205279
TU277982 lncRNA upstream 170572 22717269 ~ 22719419 (+) False LOC120548706
TU278119 lncRNA downstream 17022 22922315 ~ 22922639 (+) True G205349
TU278113 lncRNA downstream 19960 22925253 ~ 22928705 (+) False G205345
TU278114 lncRNA downstream 19960 22925253 ~ 22928705 (+) True G205345
TU278109 lncRNA downstream 25637 22930930 ~ 22947866 (+) True G205344
TU278111 lncRNA downstream 29439 22934732 ~ 22935857 (+) False G205344
XM_039786980.1 mRNA upstream 13277 22873591 ~ 22876714 (+) True LOC120549820
XM_039785320.1 mRNA upstream 46863 22799017 ~ 22843128 (+) True si:dkey-157l19.2
XM_039786761.1 mRNA downstream 8418 22913711 ~ 22919265 (+) True LOC120549680
XM_039786762.1 mRNA downstream 45898 22951191 ~ 22955699 (+) True LOC120549681
XM_039787071.1 mRNA downstream 612559 23517852 ~ 23528486 (+) False LOC120549876
XM_039787072.1 mRNA downstream 612884 23518177 ~ 23528486 (+) True LOC120549876
XM_039787070.1 mRNA downstream 625615 23530908 ~ 23552582 (+) True si:ch211-195o20.7
TU278034 other upstream 43583 22833987 ~ 22846408 (+) True G205294
TU277824 other upstream 361242 22525161 ~ 22528749 (+) False srp14
TU277801 other upstream 524091 22363688 ~ 22365900 (+) True gchfr
TU277798 other upstream 524139 22363688 ~ 22365852 (+) False gchfr
TU277797 other upstream 524201 22363688 ~ 22365790 (+) False gchfr
TU278270 other downstream 625770 23531063 ~ 23535670 (+) False si:ch211-195o20.7
TU278518 other downstream 1423820 24329113 ~ 24355916 (+) False ralgapa2
XR_005637306.1 other downstream 1423854 24329147 ~ 24443950 (+) False ralgapa2
TU278672 other downstream 1852568 24757861 ~ 24759494 (+) True mgst3b
unassigned_transcript_1160 other downstream 2171490 25076783 ~ 25076864 (+) True trnas-gcu_19

Expression Profile