RNA id: XM_039786980.1


Basic Information

Item Value
RNA id XM_039786980.1
length 1963
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC120549820
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 22873591 ~ 22876714 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttttataacaggATATCTCACTGGCGCGAAAAAACGCACATTGTGGGGCGGAACTTGTGCCTGTTGTTTGAGCCCCGTTTTTTTTCTAGTTTAACTAAAACAAAGTAGGCATATAGATTGCGTCGAAAAAGCGCATCTTTGTATCCAGCCAACACACGGTCAGCTTTTATTCGTTTGATCCCCGTGAACCTTGGACTCTTTGCTCTGTGGTTGCCGAGGGATTTTCAATGCCCTGAATTTCTctgtgggattttttttttttcggagaGCCGGTTGTGCAGGACGTTGTTCAGAGGCTACTGGTGTCCTTTGATCATTTCTGGGAATAAACTCAAGCGGATTTTATTAACTGGGAACATGGAGTTCGGCTGTTACCAGCACTATTTTTTCGACGATTTCGACAGAGAGGAGGATTTTTACAAGTCTACTGCACCGAGCGAGGACATATGGAAAAAGTTCGAGCTGCTGCCCACACCTCCCATGTCTCCCACCCGGACTCGGGTGGGAGACATGGGTGCTCTGCACCTCTCGCCGGGAGACAAGCTCAGCTGGCTGTCCAAAGTCCTGGGTCAGGACGAGGAGTGCGAGGGTCACATAATCCCAAATACGGAGGAGCTACTCGGCAACCTCAGCTCCATCATCATCCAGGACTGCATGTGGAGTAGTTTCTCTGCCAGCAAGCAGCTGGAGATGGTCAACGGGAGAGTTTCAGCTGCGGCACAGACAAGCGTCTCTCCGACGGCCCAGATCTCCGTGAGACCGAGCAAGGCGCAGTGCGTCTTTCCCGGTGGACCGATCGCCGCTTCGGCGACTGACTGCGTCGACCCCGCGGCTGTTCTCGCCTTCCCGGCAAGCAGCTGCAGGAAGCCGGCGTCGTCTGGCTCCGAGTCTCGCTCTGATTCCTCTGatgatgaagaggaaattGATGTGGTCACCGTTGAGAGCAAGCAGAACCGGGTGCGGCTGGTAAATGTCAGAAAACCAGTGACCATCACGGTCCGGGCCGACCCATGCCCCAAACGCTTCCATATGTCTGTCCACCGACAGCAGCACAACTATGCCGCCCGCTCCCCAGACAGCGAGCCTGAGgatgaagatgaggaggaggaggaggaggaggacgaagaggaggatgaggaagagCCTCAAAGCAAGCGTACATGCACAGCATCCAGTCAGCAGGCGGGCTCTTCGTCTGGTGTCTCCCAGCCCGGTTCCCCATCAGAGAGTCCTCAATACTCGGACGCAGAGGACACTGACCGCAGGCGGAACCACAACTTCCTTGAGAGGAAGAGGCGGAACGATCTCCGGTCCCGTTTCCTGGCCCTGCGGGATCAGGTCCCTGGTCTCGAGTCGGCCAAGACTCCGAAGGTGGCCATCCTGACCCACGCGACGGAGTACCTGGCAGACCTGCACACCAAGGAGAAACGGCAGCTCCAGGAGAAGAAACGCCTCAAAACCCGACAACAGCAGCTTCTCCGCAGATTATCTGAACTGAAGCGCTCTTGAGACACAAACAAAGTATGCTTTTGAAATAAACTGCATCGTTATTCACTGGCAGGAACTTTGCTCTAAAGTTACCTGTCACTTTTGGAAAGCTACAGTTTTTATATAACATGCTTCATGTAAATAGCTGtgcattttgtttttggaaTACATTCATATTGCTGTGGGCTTCCTATGCATTGACTGCTGGCCAATGAACCTGATCTGGGGAGGAGGAGCCGTAagtgtgctgtgtttttttattttttagtactGAACAGGGGGCAATGGAATGGATTTTATAGATATGACTAAGCTATTTCCTGGTATGCTGTAATGGGAAATTATAactttgttaaaggtcccatggcatggtgctctttggatgcttttatatagaccttagtggtcccctaatactgtatctgaagtctctttcccaaaatcagcattggtgcagaattacagccactaga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09110 LMYC, MYCL; L-myc proto-oncogene protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278029 lncRNA upstream 29205 22832052 ~ 22844386 (+) True G205293
XR_005637284.1 lncRNA upstream 42001 22830232 ~ 22831590 (+) True LOC120548825
TU278011 lncRNA upstream 93316 22777821 ~ 22780275 (+) True G205284
TU278005 lncRNA upstream 100865 22772486 ~ 22772726 (+) True G205279
TU277982 lncRNA upstream 154172 22717269 ~ 22719419 (+) False LOC120548706
TU278119 lncRNA downstream 45601 22922315 ~ 22922639 (+) True G205349
TU278113 lncRNA downstream 48539 22925253 ~ 22928705 (+) False G205345
TU278114 lncRNA downstream 48539 22925253 ~ 22928705 (+) True G205345
TU278109 lncRNA downstream 54216 22930930 ~ 22947866 (+) True G205344
TU278111 lncRNA downstream 58018 22934732 ~ 22935857 (+) False G205344
XM_039785320.1 mRNA upstream 30463 22799017 ~ 22843128 (+) True si:dkey-157l19.2
XM_039785316.1 mRNA upstream 30463 22799017 ~ 22843128 (+) False si:dkey-157l19.2
XM_039785319.1 mRNA upstream 30463 22800081 ~ 22843128 (+) False si:dkey-157l19.2
XM_039785317.1 mRNA upstream 30463 22800265 ~ 22843128 (+) False si:dkey-157l19.2
XM_039785321.1 mRNA upstream 30463 22822266 ~ 22843128 (+) False si:dkey-157l19.2
XM_039785121.1 mRNA downstream 13277 22889991 ~ 22905293 (+) True LOC120548707
XM_039786761.1 mRNA downstream 36997 22913711 ~ 22919265 (+) True LOC120549680
XM_039786762.1 mRNA downstream 74477 22951191 ~ 22955699 (+) True LOC120549681
XM_039787071.1 mRNA downstream 641138 23517852 ~ 23528486 (+) False LOC120549876
XM_039787072.1 mRNA downstream 641463 23518177 ~ 23528486 (+) True LOC120549876
TU278034 other upstream 27183 22833987 ~ 22846408 (+) True G205294
TU277824 other upstream 344842 22525161 ~ 22528749 (+) False srp14
TU277801 other upstream 507691 22363688 ~ 22365900 (+) True gchfr
TU277798 other upstream 507739 22363688 ~ 22365852 (+) False gchfr
TU277797 other upstream 507801 22363688 ~ 22365790 (+) False gchfr
TU278270 other downstream 654349 23531063 ~ 23535670 (+) False si:ch211-195o20.7
TU278518 other downstream 1452399 24329113 ~ 24355916 (+) False ralgapa2
XR_005637306.1 other downstream 1452433 24329147 ~ 24443950 (+) False ralgapa2
TU278672 other downstream 1881147 24757861 ~ 24759494 (+) True mgst3b
unassigned_transcript_1160 other downstream 2200069 25076783 ~ 25076864 (+) True trnas-gcu_19

Expression Profile