RNA id: TU278428


Basic Information

Item Value
RNA id TU278428
length 424
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G205584
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 23963296 ~ 23965840 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCAGCAATGACCATGTAAATAAATTCACCTGCTGCACGGCCTggctgcctgcagagcctgggtACCTGGTAACCAGCAGCGGCCTCAGGTCCCTCAGCCACATCTGCTCCAGGTCAGTGTGAGACAGGGCGGCACTGATCTCATCTTGTGTTAGAGTGAGAGCTCGGTGATGGAGCTTTTTCTTGTGTCCAGGGAATTCCATCGGTGCAGTGAATGAATGTCACCCAGATGACCACAGTGTAAAATAAACGCATTTTGGAGGTACTGTGGCTTCGCTCAGCCATCGTTGTTGTCGCTCCTCTCCACATTCCTGTCACTCCTCTGTAAAAGCTTACAGATCATGTGAAAAGCAGGAGGGAGGACCCGAAGCTCTCTAAACCACAAAGCGtcactgctctgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278353 lncRNA upstream 143948 23781746 ~ 23819348 (+) False G205527
TU278352 lncRNA upstream 177279 23781746 ~ 23786017 (+) True G205527
TU278351 lncRNA upstream 179217 23781746 ~ 23784079 (+) False G205527
TU278273 lncRNA upstream 470074 23492983 ~ 23493222 (+) True G205477
TU278258 lncRNA upstream 616355 23344727 ~ 23346941 (+) True G205464
XR_005637264.1 lncRNA downstream 61094 24026934 ~ 24042448 (+) True LOC120548718
TU278435 lncRNA downstream 61135 24026975 ~ 24042477 (+) False LOC120548718
TU278436 lncRNA downstream 61135 24026975 ~ 24042477 (+) False LOC120548718
TU278437 lncRNA downstream 61135 24026975 ~ 24042477 (+) False LOC120548718
TU278439 lncRNA downstream 76732 24042572 ~ 24042911 (+) True G205592
XM_039786164.1 mRNA upstream 187338 23751256 ~ 23775958 (+) True tfb1m
XM_039786165.1 mRNA upstream 187338 23751263 ~ 23775958 (+) False tfb1m
XM_039786167.1 mRNA upstream 187338 23751268 ~ 23775958 (+) False tfb1m
XM_039785184.1 mRNA upstream 393454 23553636 ~ 23569842 (+) True LOC120548746
XM_039787070.1 mRNA upstream 410714 23530908 ~ 23552582 (+) True si:ch211-195o20.7
XM_039785697.1 mRNA downstream 421 23966261 ~ 23973551 (+) True mocs3
XM_039785698.1 mRNA downstream 8387 23974227 ~ 24012289 (+) True prkd3
XM_039785699.1 mRNA downstream 8387 23974227 ~ 24012289 (+) False prkd3
XM_039785092.1 mRNA downstream 56863 24022703 ~ 24024946 (+) True foxa2
XM_039785002.1 mRNA downstream 205007 24170847 ~ 24181471 (+) False nkx2.2a
TU278270 other upstream 427626 23531063 ~ 23535670 (+) False si:ch211-195o20.7
TU278034 other upstream 1116888 22833987 ~ 22846408 (+) True G205294
TU277824 other upstream 1434547 22525161 ~ 22528749 (+) False srp14
TU277801 other upstream 1597396 22363688 ~ 22365900 (+) True gchfr
TU277798 other upstream 1597444 22363688 ~ 22365852 (+) False gchfr
TU278518 other downstream 363273 24329113 ~ 24355916 (+) False ralgapa2
XR_005637306.1 other downstream 363307 24329147 ~ 24443950 (+) False ralgapa2
TU278672 other downstream 792021 24757861 ~ 24759494 (+) True mgst3b
unassigned_transcript_1160 other downstream 1110943 25076783 ~ 25076864 (+) True trnas-gcu_19
TU278848 other downstream 1183611 25149451 ~ 25153296 (+) False LOC120549233

Expression Profile