RNA id: TU278847



Basic Information


Item Value
RNA id TU278847
length 909
RNA type TUCP
GC content 0.54
exon number 7
gene id LOC120549233
representative False

Chromosome Information


Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 25149451 ~ 25180207 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGATGGACGCGGTTGGGTTTATGACGCTGCTTTTGCTACTGGATGCACTCTTCTGCAACGTGCTAGCTACTTTATATAACATAATGTACCGTGCACTGAAAGTATAATACACTTTGCATACAattaaacactttatttaaagGTCAGAGGCTCGTTCAACCGGACGTTTTATCCAAACTAAACTTAGGTGCACCATGGCGAACCATTTCCACCTGAACACACCGCTGCTGGAGAGCGTCGCCATGTCCAAACTCGTGGGAACCGCTGTGTATCTGAAGATGGAGAATTCACAGCCCTCGGGCTCCTTCAAGATCCGTGGCATCGGACACCTCTGCCAGCAGATGGTCAGACAGTCCAAAGGGGTTGTCTGCGCTTCAGGTGGTAATGCAGGCATGGCTGCAGCCTACGCAGCCAGAAAAATGGGTGTACCGGCCACCATCGTAGTTCCCTCCTCGTCTCCTCAGCTGGTCGTTCAGAGACTCCAGGATCAGGGTGCTACTGTCAAGATCACAGGCAAGGTTTGGGATGATGCCAACGCAGAGGCCCTCAGACTGGCAGAGACTGAAGGACTCACCTTCGTTCCTCCGTTCGATCACCCCCTGCTCTGGCAGGGCCACGGCAGTATGATCGCTGAAGTCGCCGCCTCTCTGGGCCCCGGCGTGAAGCCTGGAGCTGTGCTGCTGTCTGTGGGCGGAGGAGGGCTCCTCTGTGGTGTCATCCAGGGCCTGAAGGATGTAGGCTGGACAGATGTACCCATCGTTGCAATGGAGACAGTGGGGGCCCACTGTTTCAACGCTGCGGTTAAGGCGGGGAGGTTGGTCACCCTGGATGACATCACCAGCGAGGCGAAATGTCTCGGAGCAAAGACGGTTTGCAAGAAAGCTTTTGATTACAGCCAATGCAACGAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU278799 lncRNA upstream 818 25116695 ~ 25149122 (+) False LOC120549173
TU278778 lncRNA upstream 113990 25035735 ~ 25035950 (+) True G205851
TU278774 lncRNA upstream 157973 24991619 ~ 24991967 (+) True G205847
XR_005637328.1 lncRNA upstream 230745 24850549 ~ 24919195 (+) False LOC120549090
XR_005637327.1 lncRNA upstream 230747 24850220 ~ 24919193 (+) False LOC120549090
TU278856 lncRNA downstream 199 25153495 ~ 25154889 (+) False LOC120549233
TU278881 lncRNA downstream 113525 25266821 ~ 25267027 (+) True G205911
TU278854 lncRNA downstream 114909 25268205 ~ 25270619 (+) True G205900
TU278855 lncRNA downstream 114909 25268205 ~ 25339320 (+) False G205900
XR_005637427.1 lncRNA downstream 178512 25331808 ~ 25333018 (+) True LOC120549746
XM_039785856.1 mRNA upstream 812 25097166 ~ 25149128 (+) False LOC120549173
XM_039785855.1 mRNA upstream 812 25106291 ~ 25149128 (+) True LOC120549173
XM_039785857.1 mRNA upstream 812 25106298 ~ 25149128 (+) False LOC120549173
XM_039785858.1 mRNA upstream 812 25122851 ~ 25149128 (+) False LOC120549173
XM_039786671.1 mRNA upstream 55945 25088297 ~ 25093995 (+) False LOC120549633
XM_039785965.1 mRNA downstream 10088 25163384 ~ 25212902 (+) False syt14a
XM_039785964.1 mRNA downstream 10088 25163384 ~ 25212902 (+) False syt14a
XM_039785963.1 mRNA downstream 10089 25163385 ~ 25212902 (+) True syt14a
XM_039786913.1 mRNA downstream 61793 25215089 ~ 25235741 (+) True LOC120549785
XM_039786849.1 mRNA downstream 136496 25289792 ~ 25309867 (+) True LOC120549742
unassigned_transcript_1160 other upstream 73076 25076783 ~ 25076864 (+) True trnas-gcu_19
TU278672 other upstream 390446 24757861 ~ 24759494 (+) True mgst3b
XR_005637306.1 other upstream 705990 24329147 ~ 24443950 (+) False ralgapa2
TU278518 other upstream 794024 24329113 ~ 24355916 (+) False ralgapa2
TU278270 other upstream 1614270 23531063 ~ 23535670 (+) False si:ch211-195o20.7
XR_005637370.1 other downstream 1662179 26815475 ~ 26832435 (+) False LOC120549312
TU279429 other downstream 1921311 27074607 ~ 27076498 (+) True G206314
TU279836 other downstream 3629196 28782492 ~ 28784119 (+) True G206639
XR_005637446.1 other downstream 3846545 28999841 ~ 29063647 (+) False kif6
TU280367 other downstream 5610829 30764125 ~ 30768524 (+) True fam241a

Expression Profile