RNA id: TU278799


Basic Information

Item Value
RNA id TU278799
length 1385
lncRNA type sense_over
GC content 0.36
exon number 2
gene id LOC120549173
representative False

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 25097166 ~ 25149128 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGAGACAAATCAATAtataaatatcaaaatatgcACATACAATATGACGAATTGTAAAAGGTATTTTGATGAAAATAGAGAATTTATGATTTAAATGCAGTGaatttacaggCTAGAGCAGGTAAAAGTATGTGTGAGATGTGAAGTTGGGAGAGAGGGAAGTGTGAGGAGAGAACATATAGTGTACCTATGAAGGTGTGTtaaaagagagacaggttttTGTCAGGTTTTAGATGGAGCAGCTATTAGCAGTGTCAGCCAGGAATAACGTTGGAAGTGCAACCACAAGACTAAAGAAACAGAATCCAGCAAGCTTTTGATGCATGGTGGCTGTGGTCCACATCAACACACATGCGCAACAGATGTTGAAAATATAATATTATggcatggtaaaaaaaaaaaagaactgataTCAGAAGAATATTTTGATTCTGATTTcacaaaatgataaaagaaGCATCTGTGAATAATTACAGATGCCTCAGCCTTTTACTattctgtatttatgttgactCAGCACTGGTGCATGCTGTCATATCAACATCTGTTCAACTGCAAAATGGTTGCTGCTGGTAAGACAGGAGAACAGAAGGAAAACAAGAAGGTGAGAAATgtgtttgtaaaaaaacaaacaaagcagcTACAATGTAGAAggatgaaggaggaggaggaggaggaggaggaggaattaaagtgacaacattttccacattttgaATAAAATTTCTGCCACACATTAACACCTAGTCCAGACTAGGGCCTGACACATATTGGTCCTCATACTGGGGCAATACTGATACAGGCTCTAACACTAACAATATGACTTTAACAATATGATATGATGTTTCCCATCTACCAGAAGCTCAGTGGCACATTTTTAGGAAACTTGAGTTTAGAAGGTAGAAAATATAAGTTTATACATATTCCATGGGCTAATTGCTGGAGTGTTAAAATGGGGCTACATTAGCTAATGGGGAATGGAGAAATTAAAGTGTGAAAACAACTTGACTTTCtcacaagttttttttcttcatatttacatatttcagTAGTTGTTATATGACATTTATTATTCCCCcgatttattgttttatttaaacaatTGTTTTTCTATTGttcttattattgttattattattagacacaCTGCTCTTGTTTCTTTATCTGTCAGTGCTGGCGCAGCTCACTGCTGCCGCCCAGTGTACAGAAATGTTCTGACATTTCTTTGAACATGCTGTGTAAAATATGAGGCAATAAGTTGAGGGATGTTTGACGTGAGAATGGCACATTGGTGTGAGGAGTGCGAACCATTACTTTGTGTATATGCAACCTGTAACTACACAGCTAATGTACAATGATAATAAAGACGTTATAATCCCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278778 lncRNA upstream 80745 25035735 ~ 25035950 (+) True G205851
TU278774 lncRNA upstream 124728 24991619 ~ 24991967 (+) True G205847
TU278702 lncRNA upstream 197493 24849979 ~ 24919202 (+) True LOC120549090
XR_005637328.1 lncRNA upstream 197500 24850549 ~ 24919195 (+) False LOC120549090
XR_005637327.1 lncRNA upstream 197502 24850220 ~ 24919193 (+) False LOC120549090
TU278856 lncRNA downstream 4373 25153495 ~ 25154889 (+) False LOC120549233
TU278881 lncRNA downstream 117699 25266821 ~ 25267027 (+) True G205911
TU278854 lncRNA downstream 119083 25268205 ~ 25270619 (+) True G205900
TU278855 lncRNA downstream 119083 25268205 ~ 25339320 (+) False G205900
XR_005637427.1 lncRNA downstream 182686 25331808 ~ 25333018 (+) True LOC120549746
XM_039786672.1 mRNA upstream 22700 25088290 ~ 25093995 (+) True LOC120549633
XM_039786671.1 mRNA upstream 22700 25088297 ~ 25093995 (+) False LOC120549633
XM_039786778.1 mRNA upstream 41631 25072108 ~ 25075064 (+) True marcksl1a
XM_039785715.1 mRNA upstream 159648 24948100 ~ 24957047 (+) True bsdc1
XM_039785716.1 mRNA upstream 173059 24942345 ~ 24943636 (+) True olig4
XM_039785966.1 mRNA downstream 808 25149930 ~ 25180207 (+) True LOC120549233
XM_039785965.1 mRNA downstream 14262 25163384 ~ 25212902 (+) False syt14a
XM_039785964.1 mRNA downstream 14262 25163384 ~ 25212902 (+) False syt14a
XM_039785963.1 mRNA downstream 14263 25163385 ~ 25212902 (+) True syt14a
XM_039786913.1 mRNA downstream 65967 25215089 ~ 25235741 (+) True LOC120549785
unassigned_transcript_1160 other upstream 39831 25076783 ~ 25076864 (+) True trnas-gcu_19
TU278672 other upstream 357201 24757861 ~ 24759494 (+) True mgst3b
XR_005637306.1 other upstream 672745 24329147 ~ 24443950 (+) False ralgapa2
TU278518 other upstream 760779 24329113 ~ 24355916 (+) False ralgapa2
TU278270 other upstream 1581025 23531063 ~ 23535670 (+) False si:ch211-195o20.7
TU278848 other downstream 329 25149451 ~ 25153296 (+) False LOC120549233
TU278847 other downstream 818 25149940 ~ 25153296 (+) False LOC120549233
XR_005637370.1 other downstream 1666353 26815475 ~ 26832435 (+) False LOC120549312
TU279429 other downstream 1925485 27074607 ~ 27076498 (+) True G206314
TU279836 other downstream 3633370 28782492 ~ 28784119 (+) True G206639

Expression Profile