RNA id: TU278778


Basic Information

Item Value
RNA id TU278778
length 216
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G205851
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 25035735 ~ 25035950 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caatacgctacttcatatgccaggcctataggcggcgctgtttctgctacagaaattcaccaaaaaacggagaagaagagcatagtcacttccacttcccatcataacatgactagctagattataactttctcttaatacatccgtggactataataactttcaccactgctcattttataaaggccgcctcaagaaaacgtgtctttgtttacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278774 lncRNA upstream 43768 24991619 ~ 24991967 (+) True G205847
TU278702 lncRNA upstream 116533 24849979 ~ 24919202 (+) True LOC120549090
XR_005637328.1 lncRNA upstream 116540 24850549 ~ 24919195 (+) False LOC120549090
XR_005637327.1 lncRNA upstream 116542 24850220 ~ 24919193 (+) False LOC120549090
TU278675 lncRNA upstream 269606 24757323 ~ 24766129 (+) True G205786
TU278799 lncRNA downstream 80745 25116695 ~ 25149122 (+) False LOC120549173
TU278856 lncRNA downstream 117545 25153495 ~ 25154889 (+) False LOC120549233
TU278881 lncRNA downstream 230871 25266821 ~ 25267027 (+) True G205911
TU278854 lncRNA downstream 232255 25268205 ~ 25270619 (+) True G205900
TU278855 lncRNA downstream 232255 25268205 ~ 25339320 (+) False G205900
XM_039785715.1 mRNA upstream 78688 24948100 ~ 24957047 (+) True bsdc1
XM_039785716.1 mRNA upstream 92099 24942345 ~ 24943636 (+) True olig4
XM_039785714.1 mRNA upstream 192975 24835919 ~ 24842760 (+) True LOC120549086
XM_039786340.1 mRNA upstream 211802 24789535 ~ 24823933 (+) False ldlrap1b
XM_039786778.1 mRNA downstream 36158 25072108 ~ 25075064 (+) True marcksl1a
XM_039786672.1 mRNA downstream 52340 25088290 ~ 25093995 (+) True LOC120549633
XM_039786671.1 mRNA downstream 52347 25088297 ~ 25093995 (+) False LOC120549633
XM_039785856.1 mRNA downstream 61216 25097166 ~ 25149128 (+) False LOC120549173
XM_039785855.1 mRNA downstream 70341 25106291 ~ 25149128 (+) True LOC120549173
TU278672 other upstream 276241 24757861 ~ 24759494 (+) True mgst3b
XR_005637306.1 other upstream 591785 24329147 ~ 24443950 (+) False ralgapa2
TU278518 other upstream 679819 24329113 ~ 24355916 (+) False ralgapa2
TU278270 other upstream 1500065 23531063 ~ 23535670 (+) False si:ch211-195o20.7
TU278034 other upstream 2189327 22833987 ~ 22846408 (+) True G205294
unassigned_transcript_1160 other downstream 40833 25076783 ~ 25076864 (+) True trnas-gcu_19
TU278848 other downstream 113501 25149451 ~ 25153296 (+) False LOC120549233
TU278847 other downstream 113990 25149940 ~ 25153296 (+) False LOC120549233
XR_005637370.1 other downstream 1779525 26815475 ~ 26832435 (+) False LOC120549312
TU279429 other downstream 2038657 27074607 ~ 27076498 (+) True G206314

Expression Profile