RNA id: XM_039785963.1


Basic Information

Item Value
RNA id XM_039785963.1
length 5930
RNA type mRNA
GC content 0.42
exon number 9
gene id syt14a
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 25163384 ~ 25212902 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttGCTCGCTTCAGACAGTCAGCTTGCTCCCGGCTGCCTGGTGGACTGTACCACACTATGACTCTCCCCCTACCCTCACCCTTGCAGTGGGCCGCTCCCCCTTCTTCACCGCTCGCTTTGGTGGAAGCGAAGCCCAAACAGAACATCATGGCGATTGATGGTGGCGAGCGTAACTGTGGAGTACATGAGCTGATCTGCGTCAGAAAAGTCTCTCCAGAGGTGCTGGGGTTTCTGACAGCCATCGGACTCTTCATCATCCTCATGACCCTCCTGTTCTGGTACCTGAACAACAAGTTGGCACTTGAGAACCCAGGGAGCCTTCAGTGCCTTGATGACTTCAGGAAAAAAGCCGAGTTGCAAGACAAGACCTACTCTGACGGCGACTTGCAGGGCTCGTCATCGGACAGCGAGGATGAACTCATGGGTCAGTATCAGGAAGCGGTCAGCCGCTCCCAAGGCCTCCGGGGAGGAGCCAAGGCAGCCGCTAATACCAAACACGTAGGAGGTTTCAGCTGGGAGAGCCGGCAGAAGTACAGCCCTCTGACTGCCGAGTATAACGGCTACAGCAGTGAAGCCTCGGCTGACGACGCCAACTGCATCCAGAGGATGAGACGAACGCCACCGCTGGATGAGCTTCAGCCACCTCCTTATCAGGATGAGAACGGCTCTCCAAGGATGTCCTGTACGCTGTCTGACCTGGGAGACGCCAAGTGTGACCTGTCCTATACCAGCGGCAGTCCCCACCTGTCCTTTGGCAAATGCCCCAGTGAGTGCAGTGACGGCCCTGAGACTGAGAGTTACCTCAACAAGGGCTACGAGGAGGATGTACCGAGTGACAGTACAGCTGTCCTCAGCCCAGAGGACATGTCAGCCCGTGGATCCTCAGCTCAGCTCCCTAAAGGTTATGAACCAGATCCAGTTGCAAAATATGGCACTCTGGACGTGGTGTTTGACTACGACTCAGAGGATCAGCAACTGGCAGTCACCATCACGGCAGTATCGGATCTTCCCGCCCTAAAACGCACAGGGAACATCTCCTGGCAGGTCCACCTGGTGCTGCTGCCCACCAAGAAGCAGAGAGCCAAGACAGGAATCCAGAGAGGTCCGTGCCCAATCTTCACCGAGACCTTCCGCTTCAGCCACGTGGAGTCAGAGATGATCAGCAATTACGCTATCCGATTGCGCCTTTATAGCATGCGGCggatgaagaaggagaaggtgCTCGGGGAAAAGGTGTTCTATCTCACCAAGCTCAACCTTCAGGGAAAAATGTCTGTGCCGGTCATATTAGACCCATGCTGTGCTCTCCCGGGTGGTGAATCCCAAGTCAGCCTCTCAGATATGACATGCAGTGAAAGCGCCTCATCAttccagtcagtcagtcagacctCCACACCAGAGATCCTCGTGGGCCTGGTGTACAACGCCACGACAGGACGTCTCTCTGTGGAGATCATCAAAGGCATCCATTTTAAAAACCTGTCTGCCAACAAGCCACCCAATGGGCTGTTCTGTTGTCTAAAACACTTGATAGGTGGACAGGTTTATATTATCAGAGATACATATGTTAAGCTGACCTTACTGAACTCCATGGGCCACGAGATGTCCAAGTGTAAGACATCCATCTGTCGAGGTCAACCCAACCCAACCTACAAAGAGACGTTTATCTTCCAGGTAGCACTTTTCCAGCTATCGGACGTCACGCTTATCCTGTCCGTCTACAACAAGCGCAGCATGAAGCGTAAGGAGATGATTGGCTGGATTTCGCTCGGCCTCAACAGCTCTGGAGAGGAGGAGCTCACCCACTGGACTCAGATGAAAGAGTCTAAAGGACAGCAGGTTTGCCGCTGGCACAGTTTGTTGGAGTCCTAACAGCAAGAGAACAGTAAGTGAAGAGAGTGCGTGAGGATAACTGCACAGAGCAGTTGTCATCCCAGACAGGTGAGAAATGGAGTTCAGCTGGGTTAGAGGCATGTGACAGACGTCCAGGGAACCAGGGTCAGTGGGGGTGAAGGAAAAGACAGAACAGCACGTTTCTGCACTCAGAGTTGTTTTCAGCTTGGCACAACATATTAAGCATTTTTATGGCACTGTTTGTAAAATCACCATTGATTAGTCGCATGGCTAGTAATGGGatgtcatttattttcatgGATTGCCTTGTAATGACCTTTACGTTTCTGTAGATGGcactctgtttttgtttgttgaacTGGTTGAGCTGGGACCTGTTCCAAGAAACAAGTTCTGGGCAACGTTGTTGAATTAATTATTGTCTGATAATTTTGCGCCACACCTCAAAGCTCAAACAACTGACATCAGGATGATTCTAAATCTTATCCGAAAGGTTTACAAAATGAAACATGGCCCCTCTCTTTGTTTTTCTGCCTGTATACCACAAGTTTGTGTCATATATTTAAGGGTTGACCAAAAATAGTTCACAATTTAGAAGCCAGCAGAACATGGATGTGCATGGCCACTTTTCAAATCAGTAGTAGGTAGTTATTTTCAAATTTGTCAGTTTCTTATAGGGACAATCTTACTACAGTGCAGTGAACACAAAATATGCTACTAAAGTTAGaacagttttgtttattttacatgagagatttttatatttgtgttcTTGCTCCTTGTTTTTTCCTCACTGGTTtgaagtgggcgtggcttagttGGAAAAAGGTGAAGATGTCATGTATTACCATGCACCAGTCAGAGAAGCAGGCAACATTTGAATCAAAATCATTTGTGGGAGTATTTgctaaatattataataatattaattaaaaatgatttatttttccaAGCGTTAACTTGCTATATTGAATAGTCAATGTTATAGAGAAGTGCTTTAAAAACCAAGTTGTCAGGGGTTTTAAGCCATTTTTATGGTACGAGAAACcacattttgcctttttttcccccggCTAGCTAACTAATTGTAGCAACTTTCTTGCTACATGAGTAAACAGGGCAGAACCAGTGCCATGCTCTGCCTGGGAAAaaacaccaccaccagtgtacTTTTCTACTTAGCTCTTGAGTTTGAATTTCTCCAGATGTCTGTTGTTTAAGCCAGAGGTGTGGCTACATGAAGACGCTACCATCACTGCTCATGTTTGCTACAAACATAAATCGCACCACTTCTTCCATGTAGGGAAGACGTTAGAGTTTCATGAATTTAATATGGATACAATTTAGGTTAAATCACCATGTTGTTGATGAATGTTGCTGATTATTACTTTGCCAAAGCTTAATTTGCCACATCCCAATGTGTCTACTGCAAATGTATTGCAATTACTTGTTGCATTCAAATGTGCAGGAATCTGGGAATGGAGGCATGTTGAAAGATATTTTGAAGGCCAAGGAAGTGGTGGCCATTTTGGATCGGTTTCCAGAGAACTTATAAAGAATTGATTTGGAGACTCGAGTTGAATTACACTTTTTATGAATCTCAGTCGACACTGCCGAGGCTAAACCCCTCACCATTGTTTGAGCCTCAACTTAAGTACATATATAAAACATCAGCTAAATAATTTTAGACAGGCAAATGTCAGGCAAATAAAATTCTCGACATATAACCTGACAGTGGAAGTGTCATGGTTGATGTTGAGATGAAGTTCAGTAGTGATCTCTGAGAAGAATTAAGCATTTCACATTGTTAGATATTTGTCTTGAAAACACCAGTTTGCAGAAGCAATGACAGACTGAGATATGATATATATAGAAATGTGTAGTAGTTACTGTGGTGGTTGTGTGATCTTGAGTTTCCATGCACTATTGAAAAGTCACACAGAATGTCAAAAGCATATTCAAAGACATTTTAAGACACTTTTTTATAGGTACCAAATAACTTAGTCACATATCACAGCAGTGAAGCTAACATGTGAAAAGATAATATACCCGTTAATCTCTTTTACCCGCTCTGGTGCTAATAAGTGCTGTGGCTGCACGCACGGAATCCCTTGCCTTATGGTTTAGTCAGTTCATAAATTACTGTAAGTGGACCCAGTACAAgaacagacacagatacacccTCAGAGCACACAGACCATAATTACAGGAAGCACACGCACAGCACTATTCAACCTCACTAAAGGGAATTCAAACTGCTTTCATAGGAGCCTCAGTGTGCATCGACAAATTTGCAGAATGTCTAAATGCGAATGGGTTGTATGTTTAGCTGTGGACACTTTCTCACTTCATTTCATTTACAGACAACAGAAAATACATATTCTCTTTACTGTGCCTGTGGTTGTGGTGAAAGCTAGCTTTGTGCAGTGTTTACCAAGtggatgtgttgtgtgtggttgtgtgtgttgactGGAAAGGTACAGTGGGGGGGCTGTGATAGTTGTTGTATTTTCTCGTTGGTTGTGACAATTTCTGAATTTATTTACCCGTATTTAGAACGCAGTAACACACTTCTTGAATGTCTGCCatatactttatatacagtaaatgtgttGTTATCTATTTTTGTATCAATAATGGGGAGGAAATTGTGTTCAGACAGTTAAATAGTGAAACACATATTAACCCACCCTGTGAGCAATACTATTCTGGATTGCTGTGGTTTATTCTGTTCATTTATTTGATGTTTTAGAGGTCTTAGTAGCTCTGGTCCTCTTTACATCCCCTTCTCTAAAACCAGAAAGGGATGTGACAGAAACCAGCAGAGCtcatcttaaaatcaatctgtcAAGACCTTTGATGCTTTTTAACAGTGTGAAACAGAAGCACAGCCTTTACAGCACAACAGTCAAACACACCGTGTAAAAGCTTGGCAGTAGCTCATTTGTACATGTAGAGATAAATCATATCATTGGAATCCAAATTTCgccaagagtaaaaaaaaaaaaaaagaaatcgtgCAATATTTGTTTCATGATCAGGCTGGATCATTTGATTTGGCTTTAGTAAATTCATTCTTATGTCTTGCATTTAACTGCCAGCAGAAAAAGGGGAGTGATTTTGTTAAATCAACAGAAGGTTGATTTAGGAATAGGTGTAGAAGAAGGTGTAGGAATATAAATAGAGTGATCTTTCACACTGTTAGTGGGTGTCTGATGCTCCATAGTCAAGCCTATTATCAGTTAAGAAGTCGATTCCTGTGCGTCCTGGAATGATGCACAATGGTGACAAAAAGGTTCTTCAACAACTCTTCACagaaaaattgtaaaatttAAATACAGACTAATACTTTCTTTAGAGCACCACATATTCTATTGACATGCCACTTATTTTTTTGAATGTTAAGATCTGGTCTTGCTACAAAACTACGGAAGCAAAAATAGGCCAAAAGGATTTTAATCTTGCAAGCAATTGAATATCTAGATGTGAGatttaaattataataaatccgcctcttaaaaaaaaattagaatgcacacttgattttaaatgtgtttaaaggTATGCAAATTCAGATGAAAAATTGCGcccaaaatgaaagaaaaactaCATTCAGGTCATTTTCAGATCTAAAATTTCAGTTGAGTTCAGTTGAGTAAAAAAACCCATCAGGGTGCTAAAACTAGATAGGGGAAATTCAGAAACAGTTTTGAAATTCAAACCACATACATTGAGATGTatgttttttaaagttattaatGCTATTAATAAAGTAGTATTTAAAATGCTACATTAAGTAGTAGTTATTTTTCACAATAAGGTACTCAGCtgcatttaaaatatgttttatggcCATTCTTTGCTCCTGTACAAACCAACACAAAGGCTGGGTGGAACAATTTTCTATAGCTCTTTGTTCTGCTAATCTTTCACAAGATGTGTTCCACTAataaggtttttaaaaaaatatggctATGCTTTGCAGTATAGTTTCTTGTGCTTTGATTTCCTTGacacatttccaaaaaaaaaactgtttaaatgctggttttaatttgtgtttttttttttcttttt

Function

GO: NA

KEGG:

id description
K19328 SYT14_16; synaptotagmin-14/16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278856 lncRNA upstream 8496 25153495 ~ 25154889 (+) False LOC120549233
TU278799 lncRNA upstream 14263 25116695 ~ 25149122 (+) False LOC120549173
TU278778 lncRNA upstream 127435 25035735 ~ 25035950 (+) True G205851
TU278774 lncRNA upstream 171418 24991619 ~ 24991967 (+) True G205847
XR_005637328.1 lncRNA upstream 244190 24850549 ~ 24919195 (+) False LOC120549090
TU278881 lncRNA downstream 53919 25266821 ~ 25267027 (+) True G205911
TU278854 lncRNA downstream 55303 25268205 ~ 25270619 (+) True G205900
TU278855 lncRNA downstream 55303 25268205 ~ 25339320 (+) False G205900
XR_005637427.1 lncRNA downstream 118906 25331808 ~ 25333018 (+) True LOC120549746
TU278981 lncRNA downstream 188203 25401105 ~ 25413681 (+) True G205986
XM_039785856.1 mRNA upstream 14257 25097166 ~ 25149128 (+) False LOC120549173
XM_039785855.1 mRNA upstream 14257 25106291 ~ 25149128 (+) True LOC120549173
XM_039785857.1 mRNA upstream 14257 25106298 ~ 25149128 (+) False LOC120549173
XM_039785858.1 mRNA upstream 14257 25122851 ~ 25149128 (+) False LOC120549173
XM_039786671.1 mRNA upstream 69390 25088297 ~ 25093995 (+) False LOC120549633
XM_039786913.1 mRNA downstream 2187 25215089 ~ 25235741 (+) True LOC120549785
XM_039786849.1 mRNA downstream 76890 25289792 ~ 25309867 (+) True LOC120549742
XM_039786848.1 mRNA downstream 76890 25289792 ~ 25309867 (+) False LOC120549742
XM_039786850.1 mRNA downstream 133261 25346163 ~ 25363785 (+) True LOC120549743
XM_039785439.1 mRNA downstream 483199 25696101 ~ 25712897 (+) True metap1
TU278848 other upstream 10089 25149451 ~ 25153296 (+) False LOC120549233
TU278847 other upstream 10089 25149940 ~ 25153296 (+) False LOC120549233
unassigned_transcript_1160 other upstream 86521 25076783 ~ 25076864 (+) True trnas-gcu_19
TU278672 other upstream 403891 24757861 ~ 24759494 (+) True mgst3b
XR_005637306.1 other upstream 719435 24329147 ~ 24443950 (+) False ralgapa2
XR_005637370.1 other downstream 1602573 26815475 ~ 26832435 (+) False LOC120549312
TU279429 other downstream 1861705 27074607 ~ 27076498 (+) True G206314
TU279836 other downstream 3569590 28782492 ~ 28784119 (+) True G206639
XR_005637446.1 other downstream 3786939 28999841 ~ 29063647 (+) False kif6
TU280367 other downstream 5551223 30764125 ~ 30768524 (+) True fam241a

Expression Profile