CI01000135_00696281_00705815


Basic Information

Item Value
gene id CI01000135_00696281_00705815
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000135
NCBI id null
chromosome length 1546597
location 696281 ~ 706500 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000135_00696281_00705815.mRNA
ACTTTCCTGTCATTAATTTTATCACTACAATCTGTTATCTTTTGATCCGTCAGAACAATAAATATATGAACCTGAGGAGTGTGTTCAGTTACAGCTTTTCGTCCCATCATCGCATAGAGTATTTATAGTTTACGATAAAGTTTATTCACACAATCTCTCTCTGAATGTTCAGTTACAGTGATTTATGGATACTGTTTTACAGCCCTTATCCAAGTAAATTGTTGCTCATTTCTAAATAACTCAATATCTGCTAATGTTTTTCATTATTGAGGGTCAGAGTTCATTGTGTGTTCACTGTGGCAGAAAAACAGCACTGGAGGAGGCAAATGTAAATAACATTGGAGAACATTTAGTGTTAAAGCACTCATTCACTCTTCAAACACTGTTATCTTTCAGCCAGCCGTTTCTCTTTCAGTGATATCACTGAGTAAATATCTGGAAGGTGTTTTCTCTCGATACTAAGCGTGTCTGTAATGTCATCTCCAGTATTGTTGTTTCAGTGCTCTATCTCCTGTAAACAGGCTCGTGCGGTTTGTTTGGTGCAGCAGCGCCTCCTCCGGCGCCTTTCAGAAGCGCAGCCGCACACTGTCAATCATCTCCATGACAACCACTCGACGCACAACACCAACACGAGATGTTGGGATGTTTACAAGTTAAAACCCTGTAGATGTTATAGTTTAGAAACATGTCGAGTACACAGGCTGAAAGCGTTATTAGAAACATCATCCGTGAGATCGCGCAGACGTGTTTGAGCAGAGGACAGACTCTGTCGGAGACACTCATCGCGTTCATGGTGAGTGACTGTGATCAGACGAATAAAGCTGATGAATGTTGTAGTTCAGCTCAACATGTGGTGAAACTATGTGTCCAGGTCAAAGCTGTGGTTCTGGACCCCAGGAATCATTTTAATGTGGACAGGACTCTTACAAAGCAAGATGTGCAGAAACTCATAGAGCTGTGTGTGGACAGACTCATGGACCAGACCAGTCCAACTCTACACACCATTAAGATGCAGGTTTACTTTGACATGAACTACACGTCTCGACGTGAGTTTCTGGAGATGCAGCAGAAGGTTCTGCAGTCTCGTCTGCTGTCTCTGAGCAGAGAGATCACTGACTGTCGAGCCAAGACCAGAGAGGACCTGCAGAGTCTGTACAGCAAGATAGTCAGCTACGTCATGCAGCGCTCCAACCTCGGATCAGCCACAGACATCAACGCCGTGAGAGAAACCACAGCGGCTCTGCAGAGCGTCTTTCCACAGTCACAGCTGGCGACCTTCATGTCTCTGCTGAAACAAGACAAGGAGAAGCAGCTGACTCAACTGTCTCTGATCGTCAGCGGCATACGCCTCTTCAACAAGGACAGCAACAAAGGAGGAGAGGGCATCCAGAACTTGCCGTCCATCCTGAACGAGGCGGTGCCAGCCGCAGTGGCAGATATAGAGAGTGAACTGGCAGGAGCTCAGCGGTTGGCCTGGCAGTACACAGCCCTGCTGGAGAAGATCTCTGAGCAGGACACGAGGCAACCCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000135_00696281_00705815.mRNA True 1530 mRNA 0.46 5 696281 706500

Neighbor

gene id symbol gene type direction distance location
CI01000135_00679808_00684801 NA coding downstream 11480 679570 ~ 684801 (-)
CI01000135_00623693_00630930 AKIRIN2, CF166 coding downstream 64811 623473 ~ 631470 (-)
CI01000135_00609374_00620722 RARS2 coding downstream 75559 609347 ~ 620722 (-)
CI01000135_00578080_00588322 NA coding downstream 107738 576969 ~ 588543 (-)
CI01000135_00524340_00537589 NA coding downstream 157566 524149 ~ 538715 (-)
CI01000135_00707778_00716012 NA coding upstream 401 706901 ~ 716012 (-)
CI01000135_00791752_00800033 NA coding upstream 84224 790724 ~ 800871 (-)
CI01000135_00881762_00883731 NA coding upstream 174474 880974 ~ 883731 (-)
CI01000135_00909940_00911418 TMEM200A coding upstream 203258 909758 ~ 911564 (-)
CI01000135_00935305_00937803 L3MBTL3 coding upstream 227974 934474 ~ 939483 (-)
G347162 NA non-coding downstream 10111 685358 ~ 686170 (-)
G347136 NA non-coding downstream 181722 514343 ~ 514559 (-)
G347055 NA non-coding downstream 473722 222176 ~ 222559 (-)
CI01000135_00215508_00237582 NA non-coding downstream 480097 215469 ~ 237856 (-)
G347193 NA non-coding upstream 10304 716804 ~ 717158 (-)
G347194 NA non-coding upstream 17707 724207 ~ 724481 (-)
G347198 NA non-coding upstream 98779 805279 ~ 877916 (-)
G347172 NA non-coding upstream 119044 825544 ~ 846398 (-)
G347001 NA other downstream 199870 198316 ~ 496411 (-)
G347279 NA other upstream 440503 1147003 ~ 1216826 (-)
G347296 NA other upstream 625864 1332364 ~ 1366129 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017829 cfap206 coding NC_007131.7 CM002904.2 2648405 ~ 2667902 (-)
bowfin (Amia calva) AMCG00003608 NA coding CM030121.1 CM030121.1 11510405 ~ 11515479 (+)