XLOC_017829 (cfap206)


Basic Information

Item Value
gene id XLOC_017829
gene name cfap206
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 2648405 ~ 2667902 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035228
CGCCGCCGGACACTAATGAGTGTAAAAACACGGTAAACGCGGTAAATACAGTAGCTGGTCATCATGTCGAGTTCACAGGCTGAAGGAGTGATAAGAAACATAATCCGAGAAATCTCGCAGACGTGTTTGAGCAGAGGACAAACTCTGAGTGAGACTCTCATCGCGTTCATGGTGAAAGCTGTAGTTCTGGACCCCACCAATCATTTCAACGTGGACAGAACTCTTACAAAGCAAGATGTGCAGAAACTTATTGAGCTGTGTGTGGACAGACTCATGGACCAGACCAGTCCAACTCTCCAAACCATTAAGATGCAGGTTTACTTCGACATGAACTACACTCCTCGACgggAGTTTCTGGAGATGCAGCAGAAGCTCCTTCAGTCTCGTCTGCAGTCGCTGAGCAGAGAAATCACTGACAGCAGAGCAAAGAGCAGAGAAGATCTGAAGAAGCTGTACGGCACCATAGTCCACTACATCATCCAGAGCTCCAACCTGAGCTCCAGCACAGACATCAACACCGTGAGAGAGaccacagcGGCTCTGCAGAGCATCTTTCCCCCGTCTCAGCTGGGAAGCTTCATGTCTCTGCTGAAATCAGACAAAGAGCAGCAGCTGAAGGAAAACTCTCTAATCGTCAGTGGCATTCGGCTCTTCAACAAGGACAACGGTGAAGGAGGAGAGGCCATCCAGAGCCTGCCGTCTATCCTGAACGAGAAGCTGCCGGGCGTCGTCTCAGATCTGGAGCGTGAACTGGCGTCCTGCGAGCGTTTGTGCTGGCAGTACACCGGCCTGCTGGAGCTGATCTCTGAGCGGGACACAGCACACAGCCAGAGCCCCGTCCCGCCCCGGCTGCTCACACAGGCTCTGTACAACACACGGCAGCATGAGGCCTTCCTCAGACTCACACTGGCGGACGTCATCCTGTGTGCACAGGAAGTGACACGTTTACAGTCGGATCTGATGAGTCGAATGACACTCCTGAGAGACGCCATTCACACCAAAACTACAGTGCCAACAACACACGTGTTTCCTCATTTCAGTGCAGTGGGCCGGCTGTGGGCGGGGCTAGAGCAGGAGATGCTGCTACTGAGCATGCTCACTAATGTGGCGTCTGGACTGAGAGTCTTCCTGACAGCAGAGTCTCTGCTGACCCCAGATCAGATGGAGCTCCCGGTGCGCACTGATGCTGACAGATGCTCTGGGAcagcagaggagCGTGTGCTGGTGTCAGAGACGAGCTCGTGTGAATGCTGTTTTCCTGAAAGCACTGCAGACTTCCAGCATCTGCCGCTGCAGTATAACGGCTTCTGCGGAGTCGCTCTGGTGGACAGAAATGGCCTTTTACTGCCAGGTAACACAAGCATCGGCGTGCTGAAGCACAAGGAGAAATATTACGCGTTCAGCAGCAGGAGCGCAGCATACGAGTTCTCCTGTCGAGCAGATGAATACACAGCAGCGGTGCTGGAGACGGCCAGCAGAACACCTGAACTCATCCAGCTGCTGCAGCTGCAGCAGCACTTCACCAGCAGCACTGCATACTCTCAGCTGCCAGCGGGACACCAGAGTCTGACAGCAGGGATGCCATCCGGACAGAAACTGCTGCTGAAAAGCATCTCTAAAAGTGACGCCGGTGTTCAGACGGAGATCCACCCTCTGCAGAGCAACATCTGCACCTCCTATGAGTGGAACGAGTGGGAGATGAGAAGAAAAGCCATTAAACTGGCTAATCTGCACAGTAAAGTGACCCGATCATCTCAGAGTGATTGGAGTTTGATGCGGAGACACAACAGCTCTCAGACGTTCCTCCCTAAAGACGCCAGCTGCCAGACAAAGCGAGACGGAGAGAGTCTCGTCCCCAAAGCACAGGTGTATCTGTCTAGCCTGAGAGGAGCCGCTGGATTTAGAAAGGTGGATTTAAGCAGAGCAGTTGATGAATGAGAAGCTTCGGTGTCTGCCTGAGTAAAAGCTCCGCTCTTCGTAGGATAGTTAGAGGAAGGTTGCTAATCATTGACATCCACTGTAATTTGTTAAATAACAAAGttccagtgaaattaaaataaagtgttttagatGTTAGTC

Function

symbol description
cfap206 Predicted to be involved in regulation of cilium beat frequency; regulation of flagellated sperm motility; and sperm axoneme assembly. Predicted to act upstream of or within cell projection organization. Located in motile cilium. Orthologous to human CFAP206 (cilia and flagella associated protein 206).

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0035082 axoneme assembly biological_process
GO:0030030 cell projection organization biological_process
GO:0031514 motile cilium cellular_component
GO:0042995 cell projection cellular_component
GO:0097649 A axonemal microtubule cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0001534 radial spoke cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-460 Predicted to be involved in regulation of cilium beat frequency; regulation of flagellated sperm motility; and sperm axoneme assembly. Predicted to act upstream of or within cell projection organization. Located in motile cilium. Orthologous to human CFAP206 (cilia and flagella associated protein 206).

Ensembl:

ensembl_id ENSDARG00000021997

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035228 True 2079 mRNA 0.52 12 2648405 2667902

Neighbor

gene id symbol gene type direction distance location
XLOC_017828 bub1 coding downstream 7159 2610550 ~ 2641246 (-)
XLOC_017827 med23 coding downstream 64290 2499622 ~ 2584115 (-)
XLOC_017826 BX072559.1 coding downstream 149464 2497521 ~ 2498941 (-)
XLOC_017825 NA coding downstream 166584 2478216 ~ 2481821 (-)
XLOC_017824 NA coding downstream 223045 2416455 ~ 2425360 (-)
XLOC_017830 rars2 coding upstream 14090 2681992 ~ 2713190 (-)
XLOC_017831 NA coding upstream 48047 2715949 ~ 2725930 (-)
XLOC_017832 cdk19 coding upstream 211798 2879700 ~ 2949028 (-)
XLOC_017833 NA coding upstream 307803 2975705 ~ 2979084 (-)
XLOC_017834 ppil4 coding upstream 314479 2982381 ~ 3004126 (-)
XLOC_017928 CU539064.1 misc upstream 7385503 10053405 ~ 10053701 (-)
XLOC_017822 NA non-coding downstream 359689 2286672 ~ 2288716 (-)
XLOC_017821 NA non-coding downstream 508159 2135895 ~ 2140246 (-)
XLOC_017842 CU570797.6 non-coding upstream 654702 3322604 ~ 3322820 (-)
XLOC_017843 CU570797.13 non-coding upstream 655664 3323566 ~ 3323782 (-)
XLOC_017844 CU570797.4 non-coding upstream 656581 3324483 ~ 3324698 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000135_00696281_00705815 NA coding CI01000135 null 696281 ~ 706500 (-)