XLOC_017830 (rars2)


Basic Information

Item Value
gene id XLOC_017830
gene name rars2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 2681992 ~ 2713190 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035229
CAATATCTTCCGGTTTCTCAGAGAGGCGTCCTGACAGCAGAATCCACGCGTGTGCTGGGGTGAAGGAGATCAGCGCTGGTCGCAaactcttcatcatcttcatctgtaCCTGATGGCGTGTTTTTTCAGGAGGAGTGCAgctctgcagCTGGCGAAGGCCTGTGGTCAGAATGAGGAGACGCTCATCCCACTGATCTCTGTGGCGCCGGTCAACAAGAAACAgagtgTGGCAGATCTGCGTGTGTCAGTCAGTCATCTTCTGCAGAGCGGAGCTGTTCGTCCTGATGGAGACCTGCAGAACACCACACACACGCTGGCCCGACAGATCAGAACGGATGCTGTGGTGGAGGAGGTCATCCCCGGCAGAGGAGTGATTCACTTCAGACTCAACAAACTCCTCCTGGCGCAGAAACTTTTAGACCAGCTGCGCTCAGATCCAGACGGCTTCGGTGTGAAGAGTGAAATCCTGCGCCGGCTTCGGGTCGGCCGGACACTGGTGGAGTTCAGTTCTCCAAACATCGCCAAGAAGTTCCACGCTGGACATCTCAGATCCACCATAATCGGAAATTTCATTGCCAACCTAAAGAAGGCTTTAGGGAATGAGGTGATCCGAGTCAATTATCTGGGCGACTGGGGAATGCAGTTCGgtctgTTGGGCTCAGGGTTTGAACGATTCGGCTCTCAGGAGAAGCTAAGGACGCAACCACTGGAGCATCTGTTTGAGTCATCTGTTGGTGGATGCTGTGTGTTTCTGTATGGCTCAGCTGTGTGTGTCCGCCCGCAGGTGTATGTGCAGGTGAACCGCGAGGCGGAGAGCGATGCCAGTGTGCGTTCGGCTGCTGCTCATTTCTTCAGGCGTCTTGAGCAGAGCGAGGAGCAGGCGCTGGAGCTGTGGAGACACTTCAGGGAGATCACCATCCATGAGTACAAGCGCATCTATCAGCGTTTAGGAGTGGAGTTTGATCATTACTCCGGAGAATCTTTTCATCGAGCTGAAACACAGACTGTGCTGGACGAGCTGAGGAGCAGACGCCTGCTGAAGACCTCACAGAAGGGAACGGGTGTGGTGGATCTGTCTGATAAGGGCGACATGTCCAATTACGCCACACTGGTCCGCAGTGATGGGACATCCCTGTACATCACCAGAGACGTGGCAGCGGCGCTGGACAGGAAGCAGAGGTTTAGCTTTGATGAGATGATCTACGTGACAGATAAGAGTCAGACTATGCACTTCCAGCAGCTCTTCAGAATCTTACAGGCCATGGGGCACCCGTGGGCCGGCAGTTGTCATCATGTGGCGTTCGGCCTGGTGCAGGGCATGAGCACTCGACGTGGGGAGGTGCTGTTCCTGGAGGACGTGCTGGAGGAGGCGCAGAGCCGGATGATCCATAACATGAGGCAGTCCCGCACTTCTAAAGAGCTGGAGGATCCGGAAGTGACCGCAGAGAGAATCGGGATCAGTGCTTTAATCGTACagGACTTCAAAGGGCCGCTGATTTCTGACTACAGGTTTGAATGGGACAAAGTCCTGCAGGCTCAAGGAGACACGGGTGTGTTTCTGCAGTACACACACGCTCGCctctgcagtttATTGCGGCAGCAGGACTGCGAGATCTCCTGCTCTGACTTCTCTCCTCTAACAGACAGCAGGAGTGTGTCTCTCCTCCAGCACCTGCTCAGGTATGATGAAGTGCTGCTTCAGTGTGCAACTGACCTGCAGCCCAAACACCTGGTCAACTTCCTCATGACTCTAAGTCATCTAGTGGCATCGGCTCATCGAGAGCTGCCTGTGAAGGGTAGTTCAGAAGCGGTGGCGCAGGCCAGACTGTGTCTGTTCAGCTCCGTCCGCTCAGTTCTGGCCAATGGCATGAGGATTCTGGGCATCACTCCGGTTGATAAGATGTGAATAGTttgtaaattattaaaagtgttttgttttcta
>TCONS_00035230
CTCAACAAACTCCTCCTGGCGCAGAAACTTTTAGACCAGCTGCGCTCAGATCCAGACGGCTTCGGTGTGAAGAGTGAAATCCTGCGCCGGCTTCGGGTCGGCCGGACACTGGTGGAGTTCAGTTCTCCAAACATCGCCAAGAAGTTCCACGCTGGACATCTCAGATCCACCATAATCGGAAATTTCATTGCCAACCTAAAGAAGGCTTTAGGGAATGAGGTGATCCGAGTCAATTATCTGGGCGACTGGGGAATGCAGTTCGGTGTATGTGCAGGTGAACCGCGAGGCGGAGAGCGATGCCAGTGTGCGTTCGGCTGCTGCTCATTTCTTCAGGCGTCTTGAGCAGAGCGAGGAGCAGGCGCTGGAGCTGTGGAGACACTTCAGGGAGATCACCATCCATGAGTACAAGCGCATCTATCAGGAGTGGAGTTTGATCATTACTCCGGAGAATCTTTTCATCGAGCTGAAACACAGACTGTGCTGGACGAGCTGAGGAGCAGACGCCTGCTGAAGACCTCACAGAAGGGAACGGGTGTGGTGGATCTGTCTGATAAGGGCGACATGTCCAATTACGCCACACTGGTCCGCAGTGATGGGACATCCCTGTACATCACCAGAGACGTGGCAGCGGCGCTGGACAGGAAGCAGAGGTTTAGCTTTGATGAGATGATCTACGTGACAGATAAGAGTCAGACTATGCACTTCCAGCAGCTCTTCAGAATCTTACAGGCCATGGGGCACCCGTGGGCCGGCAGTTGTCATCATGTGGCGTTCGGCCTGGTGCAGGGCATGAGCACTCGACGTGGGGAGGTGCTGTTCCTGGAGGACGTGCTGGAGGAGGCGCAGAGCCGGATGATCCATAACATGAGGCAGTCCCGCAGT
>TCONS_00035231
CAGCGCTGGTCGCAaactcttcatcatcttcatctgtaCCTGATGGCGTGTTTTTTCAGGAGGAGTGCAgctctgcagCTGGCGAAGGCCTGTGGTCAGAATGAGGAGACGCTCATCCCACTGATCTCTGTGGCGCCGGTCAACAAGAAACAgagtgTGGCAGATCTGCGTGTGTCAGTCAGTCATCTTCTGCAGAGCGGAGCTGTTCGTCCTGATGGAGACCTGCAGAACACCACACACACGCTGGCCCGACAGATCAGAACGGATGCTGTGGTGGAGGAGGTCATCCCCGGCAGAGGAGTGATTCACTTCAGACTCAACAAACTCCTCCTGGCGCAGAAACTTTTAGACCAGCTGCGCTCAGATCCAGACGGCTTCGGTGTGAAGAGTGAAATCCTGCGCCGGCTTCGGGTCGGCCGGACACTGGTGGAGTTCAGTTCTCCAAACATCGCCAAGAAGTTCCACGCTGGACATCTCAGATCCACCATAATCGGAAATTTCATTGCCAACCTAAAGAAGGCTTTAGGGAATGAGGTGATCCGAGTCAATTATCTGGGCGACTGGGGAATGCAGTTCGgtctgTTGGGCTCAGGGTTTGAACGATTCGGCTCTCAGGAGAAGCTAAGGACGCAACCACTGGAGCATCTGTTTGAGATTTCTAAAGGACTCTTGCAAACTCATGTGGACTTCTTGATGATGATTGTTTAACTGCGGAACAACCAACTCATTGTCAAAAAAGTGCTTGTAACAAGTCTCCTGGCCTACATTCAGAAATTTCCTACAaatttggtgccgtgacccggcaGAGACTGAAATTGTTCTACGTATTGAACTCTGGAGGTTGTAATGAACAGTTTAATATTATATTGAGTATTGTGtca

Function

symbol description
rars2 Predicted to enable arginine-tRNA ligase activity. Acts upstream of or within brain morphogenesis. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 6. Orthologous to human RARS2 (arginyl-tRNA synthetase 2, mitochondrial).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0006420 arginyl-tRNA aminoacylation biological_process
GO:0048854 brain morphogenesis biological_process
GO:0032543 mitochondrial translation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0004814 arginine-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1244 Predicted to enable arginine-tRNA ligase activity. Acts upstream of or within brain morphogenesis. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 6. Orthologous to human RARS2 (arginyl-tRNA synthetase 2, mitochondrial).

Ensembl:

ensembl_id ENSDARG00000032277

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035229 False 1942 mRNA 0.54 20 2681992 2713190
TCONS_00035230 False 882 nonsense_mediated_decay 0.55 10 2689548 2708120
TCONS_00035231 True 881 mRNA 0.50 9 2700195 2713120

Neighbor

gene id symbol gene type direction distance location
XLOC_017829 cfap206 coding downstream 14090 2648405 ~ 2667902 (-)
XLOC_017828 bub1 coding downstream 40746 2610550 ~ 2641246 (-)
XLOC_017827 med23 coding downstream 97877 2499622 ~ 2584115 (-)
XLOC_017826 BX072559.1 coding downstream 183051 2497521 ~ 2498941 (-)
XLOC_017825 NA coding downstream 200171 2478216 ~ 2481821 (-)
XLOC_017831 NA coding upstream 2759 2715949 ~ 2725930 (-)
XLOC_017832 cdk19 coding upstream 166510 2879700 ~ 2949028 (-)
XLOC_017833 NA coding upstream 262515 2975705 ~ 2979084 (-)
XLOC_017834 ppil4 coding upstream 269191 2982381 ~ 3004126 (-)
XLOC_017835 map3k5 coding upstream 292282 3005472 ~ 3087162 (-)
XLOC_017928 CU539064.1 misc upstream 7340215 10053405 ~ 10053701 (-)
XLOC_017824 NA non-coding downstream 256632 2416455 ~ 2425360 (-)
XLOC_017822 NA non-coding downstream 393276 2286672 ~ 2288716 (-)
XLOC_017821 NA non-coding downstream 541746 2135895 ~ 2140246 (-)
XLOC_017842 CU570797.6 non-coding upstream 609414 3322604 ~ 3322820 (-)
XLOC_017843 CU570797.13 non-coding upstream 610376 3323566 ~ 3323782 (-)
XLOC_017844 CU570797.4 non-coding upstream 611293 3324483 ~ 3324698 (-)

Expression


Co-expression Network