XLOC_017833


Basic Information

Item Value
gene id XLOC_017833
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 2975705 ~ 2979084 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036442
TTCTGTAAAgtcagacatctaaagtcattatgtgcattaaaataaagtgagaccaaacaaatattttataaaaggACATCAGTGTAAATGGTCAAGAACTCACGCTCACACACTGCTGATAGTTAATAACTTTATTGAAAGCATCAAGCTCTTAGTACAGATATATTTAGCACATCTTGACCAAGGAAATAGCAAGAGAATTGGAACGGCAAAGTTTCCCCTTCCCAACTTCCTGTGAGAAATCCCACAACCCTTTCTAAAGGGTTTCCTCACCAACCTACACAGGCTGGGGAATAACTAGTCGAAATAGAAAACAAGAAAATCCAAATCATCTGaaggagggaaaaaaaataaatagaattaaacaGTTAAACTCAGAGCGGGTCAGAAAAGGAGGGGAAGAGTTGGTCCGCAACATCAATGTTTCCCCCTCAGCTCTATACGAGCCGGTGTAGAAGATCTGAAAAGGCTTGAAATTACCAACCATTCACTGAAAAAGTGCCAGCTGTGATCTAGATATGATCATGCTTGTGATTTCTCCTAGCAGCGGTTTACATCCAATCGTTAAAACTGcctacagtaaacatccgtcaacCGTACTAGACATTCATTAAAGGCTTTCTCTGGGGGAAAACCACGTTTAGGAAGAGATTTCAGCAACCAAACAGGAGACAAAACAGAAACATCATCCCCCCTCACAGCCTAACCAGCAACACAGGgagggagaaaatgaaagcagcaCGGCCATCAGATTGTCACACGACAGAAAATGAACGTTACCTAGGGGCCGAAGCAGAGACAGCGCACGGTAAACATCCTGCTGTGTGCTAGTTGCATGCAATAGCAAATGGGGGAAAATGTTGGATGATCTCCTTCAATGCACAGAGAGGATCTGGAGAGAAATccaacaaaagagagagagaaatcaagTAATAAAGCTGCAGGTTATGCAGTGGCGGGGTGTGGAATGATCCGGGTCAGCCCTGACATGCTCAGATCAGTGTGTCTATTGTGTGCTTctgcggagagagagagagaaactctTTGTTTAGAAAAAGGAAAATGCTTTGCTGTGCGATCGGCTCACGAAAGCAAAGTGTCTGTCCAACCGTTTCAATTGAGAGGTGTCAGGCCCGGGGTCCTTCACAATGACTGAAACTAACCTAATGGCTTCTTCTGAAGCGGCTTCATTATTCAGAAAAATCCAGCTCTGCTTCTTTTATGAACACTTTCAACCAGCCGATCCCTTTGTCTTCTGTTTATACACTCAAAATAAAGGCCATTTTAGCAATGGAGGGAAGGAAGACGATGCTGGATTTCACCATGATGGTTGCGTATCGCTGATTACACTAAAGGGATCCTTCACCCAAAGATGAACTCACTGCTTACTCGCGTATTAGAAGCCTTTGAgcgtcttctgttgaacacaaataaagatattttgaagaatgctgaaaacctttaCTACTGAATTCTATAGTATAGGTTTTCCAACAATGGAATTCGATAGTTaaaagttttcagcattcttcaaactatcttcttttgtgttcaacagattaaagTTACTCGAGGTTTATAACAAATGAAGAGACCGAATTTagaggtgaactgtctctttaggATTGTCTTCTGAAATATTGACTTCGAGTTTCATTTCTTCATAGGAATGGAAATTAACCGGCATGTTTTGTGTAAGGTTCACCATCAAACTACCGTTTTACTTAAACAAGAACTGCATTTTTTCAGTAACCAATATTATTTTACCAAAACTGTAGGTCACATGTAGGTCACTTTCAGGACATTCACTTCTCTAGTgcacttaaagagacagttctgCAAAAAACGAAAATGCAGTCATCTTTTGCTTCAAATCCCTACAcacttctgtcaaacacaaaggaagatattttgaagaatgctgaaaacctatacaatggacatcaatggttacagctgtctacaaactatcttcttttgtgttcaacatattaAAGATGCTCAAGGTTTGTAACAAATGAAGAGACAGAATTTagaggtgaactgtctctttaaggctTCATCTGAAATATTGTCTTCAGTATTCTGACTAAAGCTGATGAAGATTATCAGATGAGAAAGGAGCAAGTTTCATTTCTTCACAGGAATGGAAATTAACCAGCTTGTTTAGTGTAAGTTTAACTATTGATCTACCGTTTTACTTAAACAAGagctgcatttttaaaaactgtagGTCACATGAAGGTTACTTTCAGGACATTCACTTCTCTGGTGCACTTTAATAGACAGTTCTGCTAAAAACGTTCAATCCTCATTTGCTTGAAACACCTATACATTTCTTCGGTTAaacacaaagtaagatatttaaaaaaagatgttttgaagaatgttgaaaacctgtagctATTTATTTCCATAAac

Function

GO:

id name namespace
GO:0000786 nucleosome cellular_component
GO:0044815 DNA packaging complex cellular_component
GO:0032993 protein-DNA complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036442 True 2421 lncRNA 0.39 2 2975705 2979084

Neighbor

gene id symbol gene type direction distance location
XLOC_017832 cdk19 coding downstream 26677 2879700 ~ 2949028 (-)
XLOC_017831 NA coding downstream 249775 2715949 ~ 2725930 (-)
XLOC_017830 rars2 coding downstream 262515 2681992 ~ 2713190 (-)
XLOC_017829 cfap206 coding downstream 307803 2648405 ~ 2667902 (-)
XLOC_017828 bub1 coding downstream 334459 2610550 ~ 2641246 (-)
XLOC_017834 ppil4 coding upstream 3297 2982381 ~ 3004126 (-)
XLOC_017835 map3k5 coding upstream 26388 3005472 ~ 3087162 (-)
XLOC_017836 si:ch73-212j7.3 coding upstream 166413 3145497 ~ 3160687 (-)
XLOC_017837 si:ch73-212j7.3 coding upstream 183339 3162423 ~ 3166168 (-)
XLOC_017838 spint1b coding upstream 239809 3218893 ~ 3238110 (-)
XLOC_017928 CU539064.1 misc upstream 7074321 10053405 ~ 10053701 (-)
XLOC_017826 BX072559.1 non-coding downstream 476764 2497521 ~ 2498941 (-)
XLOC_017825 NA non-coding downstream 493884 2478216 ~ 2481821 (-)
XLOC_017824 NA non-coding downstream 550345 2416455 ~ 2425360 (-)
XLOC_017822 NA non-coding downstream 686989 2286672 ~ 2288716 (-)
XLOC_017842 CU570797.6 non-coding upstream 343520 3322604 ~ 3322820 (-)
XLOC_017843 CU570797.13 non-coding upstream 344482 3323566 ~ 3323782 (-)
XLOC_017844 CU570797.4 non-coding upstream 345399 3324483 ~ 3324698 (-)
XLOC_017845 CU570797.7 non-coding upstream 346362 3325446 ~ 3325661 (-)
XLOC_017846 NA non-coding upstream 347327 3326411 ~ 3326625 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G323625 NA non-coding NC_048568.1 CM023222.3 14745691 ~ 14750021 (+)
mexican tetra (Astyanax mexicanus) G26995 NA unknown NC_035899.1 CM008302.1 48555797 ~ 48641905 (+)