XLOC_017826 (BX072559.1)


Basic Information

Item Value
gene id XLOC_017826
gene name BX072559.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 2497521 ~ 2498941 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035221
tgtactgcatgtctttggactgtgggggaacccggaggaaacccacccgaaggcagggagaacatgcaaactccacacagaaacgccaactgagctgaggttcaaaccagcgaccttcttgctgtgaggcgacagcactacctactgcgccactgccttgcctctATCACTTCTTGATGGCAGTAATTAATACATTGGAGATTAAACATGACTTGAAATGTTTGCTATTACTTGAGCATTACAAAAAAAACCAACCAACAACAAAAACTCATGGATCGACTGAAGTGACCTGTAATGTGTTACACCCGTGACTTTCAGGCCAACTCGAACAAGCTTCTGTTCATGAGACCAGACAGTGAAACAAAGAGCCGAGTAATCCTCTGTGCAGAACCAGTCTTTTCTTCCAGGAATAACTCTGAGGCTGCTCATGATTCGATCACGATGAGACCGTTTCAGGCCTTTAAAAACAGCCTGTTTTGATGAACCTAAGATCTTATCTTTAGTTAATTcgattcaagtttatttgtagagCGCTTTTCACAATGAGTATCATTACAAAGCAGCTGTGCAAAATGTGCATACATTACTGTCAAAATCAGAAAGAGTtaagGTGTCTTATATAggctag

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0033157 regulation of intracellular protein transport biological_process
GO:0043009 chordate embryonic development biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097602

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035221 True 628 lncRNA 0.43 2 2497521 2498941

Neighbor

gene id symbol gene type direction distance location
XLOC_017825 NA coding downstream 15700 2478216 ~ 2481821 (-)
XLOC_017824 NA coding downstream 72161 2416455 ~ 2425360 (-)
XLOC_017823 EPB41L2 coding downstream 136295 2287298 ~ 2361226 (-)
XLOC_017822 NA coding downstream 208805 2286672 ~ 2288716 (-)
XLOC_017821 NA coding downstream 357275 2135895 ~ 2140246 (-)
XLOC_017827 med23 coding upstream 681 2499622 ~ 2584115 (-)
XLOC_017828 bub1 coding upstream 111609 2610550 ~ 2641246 (-)
XLOC_017829 cfap206 coding upstream 149464 2648405 ~ 2667902 (-)
XLOC_017830 rars2 coding upstream 183051 2681992 ~ 2713190 (-)
XLOC_017831 NA coding upstream 217008 2715949 ~ 2725930 (-)
XLOC_017928 CU539064.1 misc upstream 7554464 10053405 ~ 10053701 (-)
XLOC_017819 NA non-coding downstream 406732 2058938 ~ 2090789 (-)
XLOC_017833 NA non-coding upstream 476764 2975705 ~ 2979084 (-)
XLOC_017842 CU570797.6 non-coding upstream 823663 3322604 ~ 3322820 (-)
XLOC_017843 CU570797.13 non-coding upstream 824625 3323566 ~ 3323782 (-)
XLOC_017844 CU570797.4 non-coding upstream 825542 3324483 ~ 3324698 (-)

Expression


Co-expression Network