XLOC_017832 (cdk19)


Basic Information

Item Value
gene id XLOC_017832
gene name cdk19
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 2879700 ~ 2949028 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035236
ATGGACTACGACTTCAAAACGAAGCTCGCCGCCGAGAGGGAGAGAGTGGAAGATCTGTTTGAATATGAAGGTTGTAAAGTGGGTCGCGGCACATACGGGCATGTTTATAAAGCGAAGCGTAAAGACGGGAAGGATGAGAAGGAGTATGCACTGAAACAGATTGAAGGAACGGGTATTTCCATGTCTGCCTGCAGGGAAATCGCTTTGCTGAGAGAGCTGAAGCATCCAAACGTCATCGCGCTGCAGAAAGTGTTTCTGTCTCACAGTGACCGTAAAGTCTGGCTCCTGTTTGACTACGCCGAGCATGATCTGTGGCACATCATAAAATTTCATCGAGCATCAAAGGCCAACAAGAAGCCCATGCAGCTGCCCAGGGGGATGGTGAAGTCTCTGCTCTACCAGATCCTAGACGGCATCCATTACCTGCACGCCAACTGGGTGCTGCACAGAGACCTGAAACCTGCCAATATCCTGGTAATGGGGGAAGGTCCAGAGCGAGGACGAGTCAAAATTGCTGATATGGGTTTTGCTCGACTCTTCAACTCTCCGCTGAAGCCTCTGGCTGATCTGGACCCAGTGGTCGTCACCTTCTGGTACCGGGCGCCTGAACTGCTCCTCGGGGCGAGACACTACACCAAAGCAATCGATATTTGGGCAATAGGCTGTATCTTTGCGGAGCTGCTGACGTCAGAGCCAATCTTCCATTGTCGACAAGAGGACATAAAGACCAGCAATCCTTTCCATCACGACCAGTTAGATCGCATATTCAGCGTCATGGGCTTCCCAGCAGATAAAGACTGGGAAGATATCAGAAAAATGCCAGAGTATCCTACCTTACAGAAAGATTTCAGAAGAACCACATATGCCAACAGCAGTCTCATCAAATACATGGAGAAGCATAAGGTCAAACCAGACAGCAAAGTGTTTCTACTGCTGCAGAAGTTGCTGACTATGGACCCCACCAAAAGAATCACGTCTGAACAGGCACTGCAGGACCCCTATTTCCTGGAGGACCCCTTACCTACATCTGATGTGTTTGCCGGCTGTCAGATCCCCTACCCCAAACGCGAGTTCCTGAGTGAGGATGAACCAGAGGAGAAAGCAGAGAAGAATCAGACGCAGCAGCACCAGCAGACGGCTGCGCAGACGCAGACACAGACGCAGCAGGCTCCGACACAGCAGAGCTCAGCGCAGACCAACGGCACATCAGGCACCGCAGGGGCAAACACAGGGCCCTCCATGCAGCACGGCCAGGACCAGGGGCCACCAAACAAAAAAACTCGCACCTCAGGAACCGGTGTTCATCAAACAGACTACCAGCACTCCAGCTCCCGACTTGGCTACCAGAGCAACATCCAAGGCTCCACCCAGTCGCAAAGCACTATGGGATATTCATCCTCATCTCAGCACTCTCATCAGTCTCACCGATACTGA
>TCONS_00035237
ATGGACTACGACTTCAAAACGAAGCTCGCCGCCGAGAGGGAGAGAGTGGAAGATCTGTTTGAATATGAAGGTTGTAAAGTGGGTCGCGGCACATACGGGCATGTTTATAAAGCGAAGCGTAAAGACGGGAAGGATGAGAAGGAGTATGCACTGAAACAGATTGAAGGAACGGGTATTTCCATGTCTGCCTGCAGGGAAATCGCTGTGAGTAACTCCAATtatatctag
>TCONS_00035238
ATGGACTACGACTTCAAAACGAAGCTCGCCGCCGAGAGGGAGAGAGTGGAAGATCTGTTTGAATATGAAGGTTGTAAAGTGGGTCGCGGCACATACGGGCATGTTTATAAAGCGAAGCGTAAAGACGG

Function

symbol description
cdk19 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation. Predicted to act upstream of or within phosphorylation. Predicted to be part of mediator complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 87. Orthologous to human CDK19 (cyclin dependent kinase 19).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-19 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation. Predicted to act upstream of or within phosphorylation. Predicted to be part of mediator complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 87. Orthologous to human CDK19 (cyclin dependent kinase 19).

Ensembl:

ensembl_id ENSDARG00000043858

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035236 False 1434 mRNA 0.52 13 2879700 2949028
TCONS_00035237 False 228 mRNA 0.47 3 2943900 2949028
TCONS_00035238 True 128 mRNA 0.49 1 2948901 2949028

Neighbor

gene id symbol gene type direction distance location
XLOC_017831 NA coding downstream 153770 2715949 ~ 2725930 (-)
XLOC_017830 rars2 coding downstream 166510 2681992 ~ 2713190 (-)
XLOC_017829 cfap206 coding downstream 211798 2648405 ~ 2667902 (-)
XLOC_017828 bub1 coding downstream 238454 2610550 ~ 2641246 (-)
XLOC_017827 med23 coding downstream 295585 2499622 ~ 2584115 (-)
XLOC_017833 NA coding upstream 26677 2975705 ~ 2979084 (-)
XLOC_017834 ppil4 coding upstream 33353 2982381 ~ 3004126 (-)
XLOC_017835 map3k5 coding upstream 56444 3005472 ~ 3087162 (-)
XLOC_017836 si:ch73-212j7.3 coding upstream 196469 3145497 ~ 3160687 (-)
XLOC_017837 si:ch73-212j7.3 coding upstream 213395 3162423 ~ 3166168 (-)
XLOC_017928 CU539064.1 misc upstream 7104377 10053405 ~ 10053701 (-)
XLOC_017826 BX072559.1 non-coding downstream 380759 2497521 ~ 2498941 (-)
XLOC_017825 NA non-coding downstream 397879 2478216 ~ 2481821 (-)
XLOC_017824 NA non-coding downstream 454340 2416455 ~ 2425360 (-)
XLOC_017822 NA non-coding downstream 590984 2286672 ~ 2288716 (-)
XLOC_017842 CU570797.6 non-coding upstream 373576 3322604 ~ 3322820 (-)
XLOC_017843 CU570797.13 non-coding upstream 374538 3323566 ~ 3323782 (-)
XLOC_017844 CU570797.4 non-coding upstream 375455 3324483 ~ 3324698 (-)
XLOC_017845 CU570797.7 non-coding upstream 376418 3325446 ~ 3325661 (-)

Expression


Co-expression Network