RNA id: TCONS_00035229


Basic Information

Item Value
RNA id TCONS_00035229
length 1942
RNA type mRNA
GC content 0.54
exon number 20
gene id XLOC_017830
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 2681992 ~ 2713190 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATATCTTCCGGTTTCTCAGAGAGGCGTCCTGACAGCAGAATCCACGCGTGTGCTGGGGTGAAGGAGATCAGCGCTGGTCGCAaactcttcatcatcttcatctgtaCCTGATGGCGTGTTTTTTCAGGAGGAGTGCAgctctgcagCTGGCGAAGGCCTGTGGTCAGAATGAGGAGACGCTCATCCCACTGATCTCTGTGGCGCCGGTCAACAAGAAACAgagtgTGGCAGATCTGCGTGTGTCAGTCAGTCATCTTCTGCAGAGCGGAGCTGTTCGTCCTGATGGAGACCTGCAGAACACCACACACACGCTGGCCCGACAGATCAGAACGGATGCTGTGGTGGAGGAGGTCATCCCCGGCAGAGGAGTGATTCACTTCAGACTCAACAAACTCCTCCTGGCGCAGAAACTTTTAGACCAGCTGCGCTCAGATCCAGACGGCTTCGGTGTGAAGAGTGAAATCCTGCGCCGGCTTCGGGTCGGCCGGACACTGGTGGAGTTCAGTTCTCCAAACATCGCCAAGAAGTTCCACGCTGGACATCTCAGATCCACCATAATCGGAAATTTCATTGCCAACCTAAAGAAGGCTTTAGGGAATGAGGTGATCCGAGTCAATTATCTGGGCGACTGGGGAATGCAGTTCGgtctgTTGGGCTCAGGGTTTGAACGATTCGGCTCTCAGGAGAAGCTAAGGACGCAACCACTGGAGCATCTGTTTGAGTCATCTGTTGGTGGATGCTGTGTGTTTCTGTATGGCTCAGCTGTGTGTGTCCGCCCGCAGGTGTATGTGCAGGTGAACCGCGAGGCGGAGAGCGATGCCAGTGTGCGTTCGGCTGCTGCTCATTTCTTCAGGCGTCTTGAGCAGAGCGAGGAGCAGGCGCTGGAGCTGTGGAGACACTTCAGGGAGATCACCATCCATGAGTACAAGCGCATCTATCAGCGTTTAGGAGTGGAGTTTGATCATTACTCCGGAGAATCTTTTCATCGAGCTGAAACACAGACTGTGCTGGACGAGCTGAGGAGCAGACGCCTGCTGAAGACCTCACAGAAGGGAACGGGTGTGGTGGATCTGTCTGATAAGGGCGACATGTCCAATTACGCCACACTGGTCCGCAGTGATGGGACATCCCTGTACATCACCAGAGACGTGGCAGCGGCGCTGGACAGGAAGCAGAGGTTTAGCTTTGATGAGATGATCTACGTGACAGATAAGAGTCAGACTATGCACTTCCAGCAGCTCTTCAGAATCTTACAGGCCATGGGGCACCCGTGGGCCGGCAGTTGTCATCATGTGGCGTTCGGCCTGGTGCAGGGCATGAGCACTCGACGTGGGGAGGTGCTGTTCCTGGAGGACGTGCTGGAGGAGGCGCAGAGCCGGATGATCCATAACATGAGGCAGTCCCGCACTTCTAAAGAGCTGGAGGATCCGGAAGTGACCGCAGAGAGAATCGGGATCAGTGCTTTAATCGTACagGACTTCAAAGGGCCGCTGATTTCTGACTACAGGTTTGAATGGGACAAAGTCCTGCAGGCTCAAGGAGACACGGGTGTGTTTCTGCAGTACACACACGCTCGCctctgcagtttATTGCGGCAGCAGGACTGCGAGATCTCCTGCTCTGACTTCTCTCCTCTAACAGACAGCAGGAGTGTGTCTCTCCTCCAGCACCTGCTCAGGTATGATGAAGTGCTGCTTCAGTGTGCAACTGACCTGCAGCCCAAACACCTGGTCAACTTCCTCATGACTCTAAGTCATCTAGTGGCATCGGCTCATCGAGAGCTGCCTGTGAAGGGTAGTTCAGAAGCGGTGGCGCAGGCCAGACTGTGTCTGTTCAGCTCCGTCCGCTCAGTTCTGGCCAATGGCATGAGGATTCTGGGCATCACTCCGGTTGATAAGATGTGAATAGTttgtaaattattaaaagtgttttgttttcta

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0006420 arginyl-tRNA aminoacylation biological_process
GO:0048854 brain morphogenesis biological_process
GO:0032543 mitochondrial translation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0004814 arginine-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1244 Predicted to enable arginine-tRNA ligase activity. Acts upstream of or within brain morphogenesis. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 6. Orthologous to human RARS2 (arginyl-tRNA synthetase 2, mitochondrial).

Ensembl:

ensembl_id ENSDART00000104606

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035225 lncRNA downstream 65551 2613098 ~ 2616441 (-) False XLOC_017828
TCONS_00035221 lncRNA downstream 183051 2497521 ~ 2498941 (-) True XLOC_017826
TCONS_00036787 lncRNA downstream 200171 2478216 ~ 2481821 (-) True XLOC_017825
TCONS_00036786 lncRNA downstream 256632 2416455 ~ 2425360 (-) True XLOC_017824
TCONS_00036785 lncRNA downstream 393276 2286672 ~ 2288716 (-) True XLOC_017822
TCONS_00035234 lncRNA upstream 2759 2715949 ~ 2719259 (-) False XLOC_017831
TCONS_00036442 lncRNA upstream 262515 2975705 ~ 2979084 (-) True XLOC_017833
TCONS_00035242 lncRNA upstream 304327 3017517 ~ 3020636 (-) False XLOC_017835
TCONS_00035243 lncRNA upstream 337444 3050634 ~ 3054406 (-) True XLOC_017835
TCONS_00036443 lncRNA upstream 613221 3326411 ~ 3326625 (-) True XLOC_017846
TCONS_00035228 mRNA downstream 14090 2648405 ~ 2667902 (-) True XLOC_017829
TCONS_00035224 mRNA downstream 40746 2610550 ~ 2641246 (-) False XLOC_017828
TCONS_00035227 mRNA downstream 40759 2619871 ~ 2641233 (-) True XLOC_017828
TCONS_00035226 mRNA downstream 62676 2615680 ~ 2619316 (-) False XLOC_017828
TCONS_00035223 mRNA downstream 97877 2499913 ~ 2584115 (-) True XLOC_017827
TCONS_00035233 mRNA upstream 2759 2715949 ~ 2725930 (-) False XLOC_017831
TCONS_00035235 mRNA upstream 3224 2716414 ~ 2725594 (-) True XLOC_017831
TCONS_00035236 mRNA upstream 166510 2879700 ~ 2949028 (-) False XLOC_017832
TCONS_00035237 mRNA upstream 230710 2943900 ~ 2949028 (-) False XLOC_017832
TCONS_00035238 mRNA upstream 235711 2948901 ~ 2949028 (-) True XLOC_017832
TCONS_00035199 other downstream 1442389 1229788 ~ 1239603 (-) True XLOC_017810
TCONS_00035232 other upstream 2759 2715949 ~ 2725519 (-) False XLOC_017831
TCONS_00035252 other upstream 609414 3322604 ~ 3322820 (-) True XLOC_017842
TCONS_00035253 other upstream 610376 3323566 ~ 3323782 (-) True XLOC_017843
TCONS_00035254 other upstream 611293 3324483 ~ 3324698 (-) True XLOC_017844
TCONS_00035255 other upstream 612256 3325446 ~ 3325661 (-) True XLOC_017845

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000135_00609374_00620722.mRNA True 1779 mRNA 0.54 20 CI01000135 609347 ~ 620722 (-)