RNA id: TCONS_00035234


Basic Information

Item Value
RNA id TCONS_00035234
length 1202
lncRNA type sense_over
GC content 0.43
exon number 3
gene id XLOC_017831
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 2715949 ~ 2725930 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaaaggccCTATTTAAAGTTACATTATTGTTggtaattaaactatattattaaaaacagtgTTATTAAACAGcattattttgcacatttttactTCACGCTCTATCAGTGAAATCTTTGATTGAGAGTGTTTACTAGTGAGTACTGAATAGGCTACTCGTGATCTAGTGGTACTCCTCttgattattcagtttttttGCTGCTATATTATGCGTTTCTGATCTGTGTACTGATTAAACTTAAAGAGTAAGCAGTGTTTACTGTACCGATGGTGTCTGTGTTTTTGTGGTGTCCAGGCTCGTCCTCTGGATCTGCGTCTCCCTCCAGACGAGAGCAGCCGCTGTTTACGCTGCGGCAGGTGGGCATGATCTGTGAGCGGCTGCTGAAGGAGCGCGAGGAGAAGGTGCGCGAGGAGTACGATGAGATCCTCACCACTAAACTCGCAGAACAGTACGATGCGTTTGTGAAGTTCACCCATGACCAGCTGATGAGGCGGTTCGGGGAGCAGCCGGCCAGCTATGTGTCCTGAGGGCCCGTTGGCAGGGGCGTCTCCTGCTGTGGTGGATCTGCCACTCTGTGAACGGGTCCGGCTGGGTGTTTCAGCAGTGCCAATCGCATCTTTCCGCTGGGCACAGAGTGTGTGTCgggcttctctctctctctctctgcagcagcagcagctcagtgCTTCCTGCCGTCGTCAACTACGCCCATATATGGACCTCCGCAACTCCTCCTCCAATCAGTGGCTCTTGTGTGTCTCCCACCGAACCCTGGATATTTATTAGGCTTTGACGATGCCTTTTATACACTCACCTGTCATTTCAtcctcgtctgttttttttttttttgtaaaatgcctTTTATTCACTGCGAATGACGTTGATTGCCATGATAAATGTGAGCCTGTGTGAAATTGATGAACTTTGGGAAAGTGTGTCTCGGAGACTGCTGTTCATAGCTTCGTGTAAATACATCCTGGCTTTCATCTGgagttttttgttttcatgtacaaatcaaatacagcatttattttgATTCCAGTCTGTTttcttgctttttatttatttttgtttgaatcttttaatgtttttttttgttttgttttttggcccATTTCCTCTGCATTATGGTTTTACTGTTCCTGTAGTTTAAAGGACTTTATGTTTGGGAAAaagtatacaaataaaatgtttacataa

Function

GO:

id name namespace
GO:0000819 sister chromatid segregation biological_process
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0048285 organelle fission biological_process
GO:0051276 chromosome organization biological_process
GO:0007076 mitotic chromosome condensation biological_process
GO:0051301 cell division biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000280 nuclear division biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000793 condensed chromosome cellular_component
GO:0000794 condensed nuclear chromosome cellular_component
GO:0000796 condensin complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044427 obsolete chromosomal part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0017054 negative cofactor 2 complex cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0090571 RNA polymerase II transcription repressor complex cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0005694 chromosome cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035225 lncRNA downstream 99508 2613098 ~ 2616441 (-) False XLOC_017828
TCONS_00035221 lncRNA downstream 217008 2497521 ~ 2498941 (-) True XLOC_017826
TCONS_00036787 lncRNA downstream 234128 2478216 ~ 2481821 (-) True XLOC_017825
TCONS_00036786 lncRNA downstream 290589 2416455 ~ 2425360 (-) True XLOC_017824
TCONS_00036785 lncRNA downstream 427233 2286672 ~ 2288716 (-) True XLOC_017822
TCONS_00036442 lncRNA upstream 256446 2975705 ~ 2979084 (-) True XLOC_017833
TCONS_00035242 lncRNA upstream 298258 3017517 ~ 3020636 (-) False XLOC_017835
TCONS_00035243 lncRNA upstream 331375 3050634 ~ 3054406 (-) True XLOC_017835
TCONS_00036443 lncRNA upstream 607152 3326411 ~ 3326625 (-) True XLOC_017846
TCONS_00036444 lncRNA upstream 612198 3331457 ~ 3331671 (-) True XLOC_017851
TCONS_00035229 mRNA downstream 2759 2681992 ~ 2713190 (-) False XLOC_017830
TCONS_00035231 mRNA downstream 2829 2700195 ~ 2713120 (-) True XLOC_017830
TCONS_00035228 mRNA downstream 48047 2648405 ~ 2667902 (-) True XLOC_017829
TCONS_00035224 mRNA downstream 74703 2610550 ~ 2641246 (-) False XLOC_017828
TCONS_00035227 mRNA downstream 74716 2619871 ~ 2641233 (-) True XLOC_017828
TCONS_00035236 mRNA upstream 160441 2879700 ~ 2949028 (-) False XLOC_017832
TCONS_00035237 mRNA upstream 224641 2943900 ~ 2949028 (-) False XLOC_017832
TCONS_00035238 mRNA upstream 229642 2948901 ~ 2949028 (-) True XLOC_017832
TCONS_00035239 mRNA upstream 263122 2982381 ~ 3004126 (-) True XLOC_017834
TCONS_00035240 mRNA upstream 286213 3005472 ~ 3087162 (-) False XLOC_017835
TCONS_00035230 other downstream 7829 2689548 ~ 2708120 (-) False XLOC_017830
TCONS_00035199 other downstream 1476346 1229788 ~ 1239603 (-) True XLOC_017810
TCONS_00035252 other upstream 603345 3322604 ~ 3322820 (-) True XLOC_017842
TCONS_00035253 other upstream 604307 3323566 ~ 3323782 (-) True XLOC_017843
TCONS_00035254 other upstream 605224 3324483 ~ 3324698 (-) True XLOC_017844
TCONS_00035255 other upstream 606187 3325446 ~ 3325661 (-) True XLOC_017845
TCONS_00035256 other upstream 608131 3327390 ~ 3327605 (-) True XLOC_017847

Expression Profile

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