RNA id: TCONS_00035243


Basic Information

Item Value
RNA id TCONS_00035243
length 730
lncRNA type retained_intron
GC content 0.31
exon number 3
gene id XLOC_017835
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 3005472 ~ 3087162 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TctaacatattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataacatcaagaaaaaatactattagACATAATGCAAAAATTTGTATaatttgaaaatttgaaaatgtgtataaaaaaacGTATAAAAACTTTTTATCAGATATAAGAAAGAAGATATAAGAAATATAAGAAAATGCTCATAAGctaaaatagaaacaaatggaCTATTAACTCCCTATTACCagtttttgtacattttctgtaagttgtttttttgtttgtttttgtaggaTTATGAATCTATTGTGAAGTTAGTTGAAACACTGGAAAAGCTGCCGACCTTTGACCCCGTGGCCCATCCTCATATAAAGTTCCACTACGCATTTGCCCTCAACAGGAGAAACCTACCTGGAGACCGTCAGAAGGCGCTGGACATTATGTTGCCATTGGTCAACTCCGATGAGCAGGTGGCGTCAGATATTTATTGTTTGGTAGGCCGTATATATAAGGATATGTTCCTGGACTCTCATTTCACAGACACAAACAGCAGAGATCAAGGCATACACTGGTGAGTCACACTTCATgaagtaacactttataataactgcacactatgagtcatttattaagcattggcaaatagttaagcattaactctaccaaggttataatagttctggatttttcattagttttagtttttatttggttttgacttc

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0000186 activation of MAPKK activity biological_process
GO:0033554 cellular response to stress biological_process
GO:0016310 phosphorylation biological_process
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004709 MAP kinase kinase kinase activity molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04010 MAPK signaling pathway
ko04013 MAPK signaling pathway - fly
ko04668 TNF signaling pathway
ko04071 Sphingolipid signaling pathway
ko04210 Apoptosis
ko04214 Apoptosis - fly
ko04530 Tight junction
ko04722 Neurotrophin signaling pathway
ko04714 Thermogenesis
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05022 Pathways of neurodegeneration - multiple diseases
ko05417 Lipid and atherosclerosis
ko05418 Fluid shear stress and atherosclerosis
ko04932 Non-alcoholic fatty liver disease
ko01524 Platinum drug resistance
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-030827-3 Predicted to enable MAP kinase kinase kinase activity. Acts upstream of or within defense response to bacterium. Human ortholog(s) of this gene implicated in Huntington's disease. Orthologous to human MAP3K5 (mitogen-activated protein kinase kinase kinase 5).

Ensembl:

ensembl_id ENSDART00000152461

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035242 lncRNA downstream 29998 3017517 ~ 3020636 (-) False XLOC_017835
TCONS_00036442 lncRNA downstream 71550 2975705 ~ 2979084 (-) True XLOC_017833
TCONS_00035234 lncRNA downstream 331375 2715949 ~ 2719259 (-) False XLOC_017831
TCONS_00035225 lncRNA downstream 434193 2613098 ~ 2616441 (-) False XLOC_017828
TCONS_00035221 lncRNA downstream 551693 2497521 ~ 2498941 (-) True XLOC_017826
TCONS_00036443 lncRNA upstream 272005 3326411 ~ 3326625 (-) True XLOC_017846
TCONS_00036444 lncRNA upstream 277051 3331457 ~ 3331671 (-) True XLOC_017851
TCONS_00036788 lncRNA upstream 367172 3421578 ~ 3424654 (-) True XLOC_017856
TCONS_00036789 lncRNA upstream 666919 3721325 ~ 3726728 (-) False XLOC_017857
TCONS_00036445 lncRNA upstream 667901 3722307 ~ 3726926 (-) True XLOC_017857
TCONS_00035239 mRNA downstream 46508 2982381 ~ 3004126 (-) True XLOC_017834
TCONS_00035236 mRNA downstream 101606 2879700 ~ 2949028 (-) False XLOC_017832
TCONS_00035237 mRNA downstream 101606 2943900 ~ 2949028 (-) False XLOC_017832
TCONS_00035238 mRNA downstream 101606 2948901 ~ 2949028 (-) True XLOC_017832
TCONS_00035235 mRNA downstream 325040 2716414 ~ 2725594 (-) True XLOC_017831
TCONS_00035244 mRNA upstream 91091 3145497 ~ 3160687 (-) True XLOC_017836
TCONS_00035245 mRNA upstream 108017 3162423 ~ 3166168 (-) True XLOC_017837
TCONS_00035246 mRNA upstream 164487 3218893 ~ 3238110 (-) True XLOC_017838
TCONS_00035247 mRNA upstream 184473 3238879 ~ 3276339 (-) True XLOC_017839
TCONS_00035248 mRNA upstream 235782 3290188 ~ 3290791 (-) False XLOC_017840
TCONS_00035232 other downstream 325115 2715949 ~ 2725519 (-) False XLOC_017831
TCONS_00035230 other downstream 342514 2689548 ~ 2708120 (-) False XLOC_017830
TCONS_00035199 other downstream 1811031 1229788 ~ 1239603 (-) True XLOC_017810
TCONS_00035252 other upstream 268198 3322604 ~ 3322820 (-) True XLOC_017842
TCONS_00035253 other upstream 269160 3323566 ~ 3323782 (-) True XLOC_017843
TCONS_00035254 other upstream 270077 3324483 ~ 3324698 (-) True XLOC_017844
TCONS_00035255 other upstream 271040 3325446 ~ 3325661 (-) True XLOC_017845
TCONS_00035256 other upstream 272984 3327390 ~ 3327605 (-) True XLOC_017847

Expression Profile

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