RNA id: TCONS_00035246


Basic Information

Item Value
RNA id TCONS_00035246
length 2436
RNA type mRNA
GC content 0.43
exon number 10
gene id XLOC_017838
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 3218893 ~ 3238110 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTACGTCATGTGCTTTATTTCCTAGAAACAACACACCTGAGTGCTGGAGCAGGTAGAAATCGGATGGAAGTGTTCTCACGATATATTTTGACGGGGAACCTGTACATTTGACAGAACAATGATAAGGGATTGACTAAAACTAACCAGTCAGTTCGGGTGACACCACAGCTCAAAGGAATCGGCTTATATTGGAGGTCTGTGCGCAAGCGTCTATCCCACGTCAGGATTATTTTTCATATCAATCAAAAATGGGTTCGTGGTGTTTTCTTTTGGTgtccttgatttttatttgcggTGTTTATGGCGGAGAGACACAGAGCAGTGAACAAAAGCAACAATGCGTAGAAACTTTCCACCACCCCGGTCGCGAAAACTTTGTCCTCCACACGGAAGAGTCGATCGAGGCTGGGGCTGTGTTCCTGGCGAACCCGAGCGTCGCTCATGAGGACGCGTGCATGGCTGCGTGCTGCAAAGACGCCAGATGCAACTTGGCTCTCGTCGAAAACCAGGCGTCCGACAACAACTGCTTTCTCTTCAACTGCTTGTATAAGCACAGATTTGTCTGTAAATTTACACCGAAGCAAGGATTCACAAACTACATATTGAGTTCCGTCTATGAAAAGTACCTGAGCGGCCGCAAAAGTGAGGGGAAGGACAGCCCTCCCATTGCCAATGCTGGCCGAGATGTCGTGGTACAGCCAAACGAGGATGTACTGCTGAATGGCAATGAGAGTTGGGATGACAAGGAGATCGTAAACTACGAGTGGAGCCTCACCCGTGGAAATAAatccgtccatatggagAAAACCAACTTTCGGGATCAGATAAGAGTGTCCAACCTGATTCCTGGGGTGTACGAGTTCAAACTGACCGTGACCGATTCAGCTGATCATTCCGATTCAGCTCAAGTCATTGTCTTGGTGCTCACTTCTGAGCAATCCGAGCGTCACTGTTTAACCCCTAAAAAGACAGGACCATGCCGAGCTTCTTTCATTCGTTGGAATTACAACGCTGCATCCAGACGGTGTGAGCAGTTCATCTTTGGAGGATGCATGGAGAACAGCAACAACTATCTCTCTGAAACAGAATGTCAGAATGCCTGTGAAAACACAACAGTCAGAGCTGGTGGAGTAACGAGAAAGGTGCCTGTGGAAGATTGTTCTTCACCGTGTGGAGTAGACTCGTTCAAATGCTCAAGCGGATGCTGTGTGAAGAAAGAGTTTGAGTGTGATGGACATCAGGAATGCAGCGATGGCTCCGATGAAAAGAACTGCCAGCAATTGAACGAAAGCCTGACCCGACTTCTTAATATTGAGGTGAATAAAAAAGCCCATTGCACAGACCCACCTGCCACAGGCCCATGCCGAGCTCATTTTCATCACTGGTACTATGACCCTCTTAGCAAAAAGTGTCATTCCTTCACCTATGGGGGCTGTGATGGAAATAGGAACAACTTTGAGACGGCAGACAAATGCATGAAGAACTGCTCTGGTGTCACAGACAAGGATGTGTTTGCTAGAGGATTACTCGTGAGGGGTGAAGAACTAGGAGAAAGCCAGTCAGCTTCTGTTGCTCTGGCTGTGGTTTTAGCTGTGGCCATCTTGGCGGTTCTGGCTGTTTTAGGCTACTTTTACCTCAAAAACAGGAGAAAACATCAGCATCAGCGTGTGGCCACCAGCAATCCTCCAGTGGGAGGCAGTGAAGATGACCAACAGATGGTCTACAGCAGCACCACTGCCAAAGCATGACTCCATACTCTTTGAAATATGTTGTGCCATACGGTGTTTGACCAGTGTAGAAtggattatattaataatttccaTATAAGTTGATAACCTTAACGTTAAACTATATAGCATATTCGCCCACTGAACCACATTGTTTATCTCAGGTCAAGGTGTTTTATTTGGATATTTACGATTAGTGTTGTTACATTGATCAGACCCAATCAtgctttttagtttattttattatattttttgtgaaatagaATAAGAAAGTTGATGAGTCTTCAAAGACATTCTTCTAACATGAGCATTTTACCTTCTAGAATTTGCCaaacaaaaacattgtaattgttgatttgttcatttgtttctaGCAAGTCTTCAAGTAACAAGTTCTTAACTCTGGGGAATTTCCTATAACATAATAGTTCTGTTTTAATTGACAAATATTTTATGGAGTTCCGATTTATTGTTTATACTGTATGTGGAAAGCCATGAGTTCTTGTTTACGTTTACAACGTGTACTCTGCCAAAACAATTGTGTCATATTTATTGtagatagatgtgtgtgtgttttaattgtatttcacattacttttttaaaaaccttcATTTATGATTTTAACCATGTAAGTGCCTTTTGGTTTATGGGGGCGGTTGTTTATCTGGAGCTGTTATTTTTCCCAAATAAAATaagttcaaatgtt

Function

GO:

id name namespace
GO:0008544 epidermis development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071218-1 Predicted to enable serine-type endopeptidase inhibitor activity. Acts upstream of or within epidermis development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in gut; lateral line primordium; and primitive olfactory epithelium. Orthologous to human SPINT1 (serine peptidase inhibitor, Kunitz type 1).

Ensembl:

ensembl_id ENSDART00000008077

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035243 lncRNA downstream 164487 3050634 ~ 3054406 (-) True XLOC_017835
TCONS_00035242 lncRNA downstream 198257 3017517 ~ 3020636 (-) False XLOC_017835
TCONS_00036442 lncRNA downstream 239809 2975705 ~ 2979084 (-) True XLOC_017833
TCONS_00035234 lncRNA downstream 499634 2715949 ~ 2719259 (-) False XLOC_017831
TCONS_00035225 lncRNA downstream 602452 2613098 ~ 2616441 (-) False XLOC_017828
TCONS_00036443 lncRNA upstream 88301 3326411 ~ 3326625 (-) True XLOC_017846
TCONS_00036444 lncRNA upstream 93347 3331457 ~ 3331671 (-) True XLOC_017851
TCONS_00036788 lncRNA upstream 183468 3421578 ~ 3424654 (-) True XLOC_017856
TCONS_00036789 lncRNA upstream 483215 3721325 ~ 3726728 (-) False XLOC_017857
TCONS_00036445 lncRNA upstream 484197 3722307 ~ 3726926 (-) True XLOC_017857
TCONS_00035245 mRNA downstream 52725 3162423 ~ 3166168 (-) True XLOC_017837
TCONS_00035244 mRNA downstream 58206 3145497 ~ 3160687 (-) True XLOC_017836
TCONS_00035240 mRNA downstream 131731 3005472 ~ 3087162 (-) False XLOC_017835
TCONS_00035241 mRNA downstream 132378 3006528 ~ 3086515 (-) False XLOC_017835
TCONS_00035239 mRNA downstream 214767 2982381 ~ 3004126 (-) True XLOC_017834
TCONS_00035247 mRNA upstream 769 3238879 ~ 3276339 (-) True XLOC_017839
TCONS_00035248 mRNA upstream 52078 3290188 ~ 3290791 (-) False XLOC_017840
TCONS_00035249 mRNA upstream 52121 3290231 ~ 3310017 (-) True XLOC_017840
TCONS_00035250 mRNA upstream 74749 3312859 ~ 3319642 (-) False XLOC_017841
TCONS_00035251 mRNA upstream 78153 3316263 ~ 3319736 (-) True XLOC_017841
TCONS_00035232 other downstream 493374 2715949 ~ 2725519 (-) False XLOC_017831
TCONS_00035230 other downstream 510773 2689548 ~ 2708120 (-) False XLOC_017830
TCONS_00035199 other downstream 1979290 1229788 ~ 1239603 (-) True XLOC_017810
TCONS_00035252 other upstream 84494 3322604 ~ 3322820 (-) True XLOC_017842
TCONS_00035253 other upstream 85456 3323566 ~ 3323782 (-) True XLOC_017843
TCONS_00035254 other upstream 86373 3324483 ~ 3324698 (-) True XLOC_017844
TCONS_00035255 other upstream 87336 3325446 ~ 3325661 (-) True XLOC_017845
TCONS_00035256 other upstream 89280 3327390 ~ 3327605 (-) True XLOC_017847

Expression Profile

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