RNA id: TCONS_00035244


Basic Information

Item Value
RNA id TCONS_00035244
length 3381
RNA type mRNA
GC content 0.44
exon number 4
gene id XLOC_017836
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 3145497 ~ 3160687 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGATAACCCGCGGCCAGCTAGCGCTTCAGAAGAGCAACACAGACAGATCACAGCTACGTGCAAAGCATGTGTCTTGGGTTAAGGCTATCATGTGATTCAGAAGTTTATTTCAGCCTTAATGGTCACACACATCCGGCAAGGgcatgtttacattgaaaaacaatagaaaagtaggCAATTGTAAAGTAAAAAAGCATTCTGTGTGAATCGTCCTTTAGACACTTGTAAAaatcacaaataataaataagaaatgataataaaagtaaaactattacaaatgtacAGTGTCTTCAGAGTATTTTAGAGTGAGGACGATGTTTGGATCATGTCCTTGTACTTCAtgagaaaataaatgcaatgtaccTCATTGTGACTTTATTGTGACCCCAGCATTCTGACATTGAGGCTCCGATGGAGGCTGACAAATGGCCACTACAGGCCACTGATAGTGTAAGCTCTGCTGATCTTGGCTTATGTGAGTCTTCAGCTGAAGAGACTGATGCACAAGAAGAATACTCTCTCAAAGCCTTTATACCCGGTGATAATGAGGAGCCAGTTCATATAATGCCGTCTGTGAAGGGCAGATTGATAcgtgaggatgaagatgaagcaGAAGCGGGGGAAAGTGACTCCGACAATATTCTAATGGAGGACAACCAGGAGGAAGAGGGGTGTGCGTTCCCTGAGAATactttcaaaaaagaaaacaagccaTCAGCTGAACAGGTCAAAGCATGTCTGAAGGATGAAAAATGCATCTTTGAACAGGACAAATCACAACATTTGAAAATGACCTCTTGCTGGGGAACCACTGACAAAACAAAGGAAGACACCTTTTGTGATCCAGAGCCCATAGATGTACATCAACATGTCCTAGATATTCGGGAGATGGAGTCTGCAATAGACCAAGATGATCTGAAAGGTcctaaaaaagagagagaggcgAGGAAGTCTTTTTTACATCAAAATGACACCCCTGGCGAATCCTCAGAGGATGAAGAAGACACAGAAGAGAAACCAGGCTCGACCAGCATCCTACCATCATCTGTGCTCGATCAGGCCAGCGCCATTGCTGAACATTTTGTCTGTACTGCGAGGCGTATTAGCATCAGCACAGATGATGCACGCTCCCCCGGTTGCCCATCGCCACATCTTCCCAGCAGGACAGGCAGCACTCTAAGTCTTCGAGATCCTCTTGAACACCAACATCGCCTGACTAGCACCTACTCTGATTCATGTGAAAGTCCTTTGACCCAGGAAAATCTTGCATCCGTAGACTTCACGATTGGGTCGTCAGTAGAAGATGGTCTTTTTGACTGTGATAGAAGCATCTGCAGAAGAAGGGATTCGGTTCTATCCACACAAGATCAACTACTCATCAGCAAGATCAGGAGTTACTATGAGAATGCTGAACACCAGGATGCTACGTTTAGCTTGAAGCGCAGAGAGAGCCTCAGTTACATTCCAAGTGGGCTTGTTAGAAACTCCGTTAGTCGTTTAAACAGCATTCCTAAAGATAAAGGTCTTGCCCTAGAGACAACAGTCAGAACATTTGAACCTGATAAAGATTGTGCTTCGTCCATGCAATCTCTATTTGACACCACAGCTCTATCAGAAGCCACTTCGAGTGCAAATTCATCCCGTCAGGAACAACCTGTTGTCAGCGCTTCCACAAATCCCACAGGGTTCAATGTAGATGGTTCTGTGAAACCTCAGTCTACCTATATTCAAGCTGAGAGTGAACAGAACGAGGTTTTCCATCCCTCCTCTGAGATGATCAAAGTATGGCAAGATATGGAAAGAGAGGTCACTAGATGTCAAGGAGACGTCAAAGCACTGGTGCCCAGAGGAAATCCTTATTTCAGAGGGATCTGTCCCAACCTTATCAGGAGGGATCCAAACCAGGACGAAAAGACTGAAGCCAAAGGAAACAAAGGACTGATTGCATTTGAAGATTCAGATTTGAGCACTATCAAAGAAGAGTCCTTCACACCATCACCGttaatagaaaaagaaaacagtgAAGCCATTAGTAGGAATGATGCCATCAGACAAAAACAATGGCAGAAAGAAGGTAGACTCCTTAGCGCTCTAGCCCCCAGAGTCATCCAGTTAAGAGCAGAATCTGAATATGAGAGAGGCACAGGAGCTCAGTCAGCTGAAGATGGAGATTCAGCCCAAAGCAAGGTTTTAAATCTTGCAAGGAAATACAGTCAGCGCATCAAGTGCACTCAACCCATGCTGAGACAGAGGAGTCAGGAGTCAGGAGAAACAGGGTTGACCAAGAGGAACATGCTGTCGGTGGTGGATGAAAAGCCAGAGGAGGTCAAAGGTAAACCAGACTCAATGCCGTCCATGGCTCCATATGATCAGGCTGATCGTGATAGAGACCAGGAGGCGCAGCTTATGCCTCTCAGCCCAGCTCGCAGTCCTACACCACCCGAGAAGTTCAACTGGCCAGATGTCCGGGAGCTTCGCTCAAAATATGCACACCTAGACAACCCGTCTTCTCAGCCAGCAGTAGCCCAAAATCAGTCTGCAGCAGACAGGATGTTTGACCGCAGTTCTACACGACGTTCCAGCTGCTCTTCTAGCCACTTAATCACTTCTAATGGCTCCTCGGATTGTTCGTTTCAAACGGTCTACAATggaaaaaatacagaacaattCCCAACTCGGACACAGCGTGCTGGCTCTCTTGACCAAAAATTGGGTAGTTTGTACTTGAGAGATCTGCATATTCTTCAGAGTACAGATGCCAGCAGTGGCTACTATGTCTCTGCTCAAGCTACGCTCCCAAATGAGAAGAATATAATTGTGATTGAGAAAGTTCCCGAGGTTCCACCGGCAGTAGAGATCGACTTATCTACGAAAGAGGGCAAGAAACCGGAATTAATGGATGATGATGGCTATGTCCAAATCCGTTCACCAACTTCTCACGAGAAGATCTCAATCAAGGCTGTCATCGACCGCTGTCGAGCGTATCAGGACTCAGAGGAATACCGTCTAAGGGAGGAAGGTGGATGTAAGACAGAAAAGTTGCCCAAGACTGAGTGTTGCAAAAAAGTAGAGAAAGCCTCATCCTGTAGTGAACCATCAGATGATGCTGTGGCTTCTGGAAAAAAGGCCGATTCTAGTCAGCACAGCGTTGTTAAGAATCTTAGAgacaaatttcaaaacataagATAAGATGTGTTGTTTTAAAGCAtctctgttttatttttcagtgtgCTAAAGACTTGTGCAATACTATTGATTCATTAATATACTTCTTTATGCCCTCACCACTGAAGGTATATTTATCAGCAGTTAAATCCTTGTGCAAATGTAAATCCCTCAAAAGTAACATCCATTACATTTTGCATGCTGTTTAACAGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000131697

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035243 lncRNA downstream 91091 3050634 ~ 3054406 (-) True XLOC_017835
TCONS_00035242 lncRNA downstream 124861 3017517 ~ 3020636 (-) False XLOC_017835
TCONS_00036442 lncRNA downstream 166413 2975705 ~ 2979084 (-) True XLOC_017833
TCONS_00035234 lncRNA downstream 426238 2715949 ~ 2719259 (-) False XLOC_017831
TCONS_00035225 lncRNA downstream 529056 2613098 ~ 2616441 (-) False XLOC_017828
TCONS_00036443 lncRNA upstream 165724 3326411 ~ 3326625 (-) True XLOC_017846
TCONS_00036444 lncRNA upstream 170770 3331457 ~ 3331671 (-) True XLOC_017851
TCONS_00036788 lncRNA upstream 260891 3421578 ~ 3424654 (-) True XLOC_017856
TCONS_00036789 lncRNA upstream 560638 3721325 ~ 3726728 (-) False XLOC_017857
TCONS_00036445 lncRNA upstream 561620 3722307 ~ 3726926 (-) True XLOC_017857
TCONS_00035240 mRNA downstream 58335 3005472 ~ 3087162 (-) False XLOC_017835
TCONS_00035241 mRNA downstream 58982 3006528 ~ 3086515 (-) False XLOC_017835
TCONS_00035239 mRNA downstream 141371 2982381 ~ 3004126 (-) True XLOC_017834
TCONS_00035236 mRNA downstream 196469 2879700 ~ 2949028 (-) False XLOC_017832
TCONS_00035237 mRNA downstream 196469 2943900 ~ 2949028 (-) False XLOC_017832
TCONS_00035245 mRNA upstream 1736 3162423 ~ 3166168 (-) True XLOC_017837
TCONS_00035246 mRNA upstream 58206 3218893 ~ 3238110 (-) True XLOC_017838
TCONS_00035247 mRNA upstream 78192 3238879 ~ 3276339 (-) True XLOC_017839
TCONS_00035248 mRNA upstream 129501 3290188 ~ 3290791 (-) False XLOC_017840
TCONS_00035249 mRNA upstream 129544 3290231 ~ 3310017 (-) True XLOC_017840
TCONS_00035232 other downstream 419978 2715949 ~ 2725519 (-) False XLOC_017831
TCONS_00035230 other downstream 437377 2689548 ~ 2708120 (-) False XLOC_017830
TCONS_00035199 other downstream 1905894 1229788 ~ 1239603 (-) True XLOC_017810
TCONS_00035252 other upstream 161917 3322604 ~ 3322820 (-) True XLOC_017842
TCONS_00035253 other upstream 162879 3323566 ~ 3323782 (-) True XLOC_017843
TCONS_00035254 other upstream 163796 3324483 ~ 3324698 (-) True XLOC_017844
TCONS_00035255 other upstream 164759 3325446 ~ 3325661 (-) True XLOC_017845
TCONS_00035256 other upstream 166703 3327390 ~ 3327605 (-) True XLOC_017847

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000195_00473436_00498770.mRNA True 3480 mRNA 0.46 13 CI01000195 473382 ~ 498770 (-)