XLOC_017840 (si:ch1073-412h12.3)


Basic Information

Item Value
gene id XLOC_017840
gene name si:ch1073-412h12.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 3290188 ~ 3310017 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035248
TTTGGCTGTCTGTTGGATGAAAACGCAGGTCTCAAGTTTGATAACAGCGGCATGAATGCAATGTCCAATGCAGACAAAGCTGGTGTTAAGCAGCTGAAGTGGGAAGCTCAACGCAATGACTGGATCTGTGGTAGAGATGTCAAAACTCTCCGGCGGAGAAAGGCAAATTTCAACAAGAACAAGTTTGGAATGGCCAGAAAGCATAAGAGTGTCAAGAAAACGAGAAGGTAGAATAAAGATGTCTGTTTATACTCGCGCCAGATTGGTGGACCAGACTTCTTGATCTGCTTCATGGATGCATTGACAGTCGCAGTGATGTACAGGAGAGGAGGAACTGCTTTGCTATATTTCTGTATGATTGTGGCTCTACAGTGGTTTAGTCAATATTGgctgttttatacattttcaatGGTTTATCATATCCAGGGGTTTGTCCATGCTTTGGAAAATGCTTAATCTCACAttataaaatgtttgaaaatgtttattttaaaa
>TCONS_00035249
GAAGAagaacacacgcgcacacacagacgGAAGTGAACGACGAAGCATGCGCTAAATGGTCATGGAGGTGGACGATCAACACTCGTGTCAGAAAAGCAGAGAAAACATGGACGCTGAGAACGAGGATTTTGATGATGCTGAAGACAGCGATCACACCGAAAATGACAAAAAGGATGACGAGCTCACGCTGGACAACGTGCTGCGTTTGGGCGGGACGAAAGCAGATTATGTCATGCTGGCTGGCATCAGCGACACTACCGAGCTCATAAATGGTGGGAAAAAAGTCATAATTGATGATCTAGAGGAGGGAGAGCTGGAAGATTTCATAAAACAGCTGGGCATCCGTGCATATGCAGATCAGCAAATCATCCAAGATGAAGAGGACCCAGCATCCTCAGAGCCAACTCAAAAGGAGGGAAAAAAAGCAAAAGGTTCCAAAGTAAAAGAGGATGCAGCACctaatgtgaaaaataaagtcaCCCCCTCAACACAAGCGACGAAGACGTCTGTTCAGTCTACAAACCTTGCCAATGCCACTGGAAAGAAGGCCAAACAAAAACccgcaaacctgtttgagttcatTCCAAGGCAATTTCTCCTTATTAAACCTGGGGGGAAGTGGTTCGATATCGAGTACACCTCAGAAGGCACGTCTGTAGCTCAAAATGAGTCTCTGACCTGTCAGTACAAGGCTTTAGCTCAGAAGCTCTACGAGAACGAAACTGCCCTCTACAAAAGCAAGAAGAGCCTTCAGAAAGGTGCCAACTCTGCCTGGATGAAGACCGTAGTGTCCACAGGAACTATGACCGATAGGATGGCAGCTATGACCGTGCTGATTCAGGATGCTCCAGTTCACAGTCTCGAGCACATCGAGAGCCTCGTGTCCATGATGAAAAAGAAAGGAAGTCGTAGACCTGGACTTATGGCGTTGGACACCCTTAAGGAACTGCTGCTGTCTGACCTCCTCCCAAAAACCCGCAAGCTTCGGACGTTCTCTCAGCATCCTTTTGAGGAGCTGGAGGAAAAATCCAGTGGCAACAAGGACACCAGGGACCGCAGGCTAATTCTCTGGTACTTTGAGCACCAGTTGAAGCTTCAGATTGCAGATTTTGTGGTCACTTTGGATGAACTTGCTCACGATATGGTCGAGGCCACCAAAATGCGAGCGCTTACCACTGCCTATGAGCTGCTGTGCAACCAGCCAGAGCAGGAGAAGTTGCTTCTCGTGCAGATTGTCAACAAATTAGGGGATCCCGAATACAAAACTGCCTCAAAAGCCTCATACTTGTTAGAAACGGTGCTTCACAAACATCCCAACATGAAGACGGTGATCTGCTGTGAGATCGAGCGCCTCATGTTCAGATCCAACATCAGCCCCAAGGCTCAGTATTATGCCGCATGCTTCCTAAATCAAGTGATTCTGAGCCACGATGAAGCAGACTTGGCTGCCAGGCTCATCACCATCTACTTCACGTTTTTCAATGCATGTGTTAAGAAGAAGAATATGGAATCGAAGATGCTGAGCGCTCTGCTAACTGGAGTGAACAGAGCTTATCCGTACGCTAAGATTGGGGATGACAGTGTATCCAAGCAGCTGGACACGCTGTTTAAAGTGGTGCATGTCGTCAAATTCAACACTGCCGTCCAAGCCCTCATGCTGCTCTTTCAAGTCATGGACTCTCAACAGACTGTTTCAGATCGGTATTATGTAGCACTCTACAGGAAATTGTTGGACCCAGGATTATTTTCAAGCTCAAGAAAGAGTATGTTTCTCAACCTCTTGTATAAATCTCTAAAGGCTGACATAGTTCTCAGGCGTGTGAAGGCATTTGTGAAAAGGCTTCTTCAGGTCAGCTGTGAGCAGACTCCTGAATTTGTATGCGGTGCACTTTTCCTTGTGTCGGAAGTGATGAAGGACAAGCCAGGCCTCAAGCTGCTACTACAAGAACAGGGGGAAGAAGAGGAAGAGTTCTATCAAGACCTCGAAGAGGATCTAGATGATAACGACACTGCTGCGGAAACTCGTGTGAATGATGAAAAAGACAAAGGAAAACCATTTACAAAACATTGTCATGTGAAGCCCACTGCATCATGGGTACATCAGCAAAATTTGGAAGGTGGTGTGAATAAGGCAATCTATGATCCCATGAACAGAAACCCTTTATACTGTGGGGCTGATCACACAGCCCTCTGGGAACTTCAGAAGCTGTCTCATCATTTCCATCCCTCCGTGGCTCTTTTTGCTAAAACCATATTGCAGGGAGAGTTCATAGTGTACACCGGAGATCCACTTCAGGACTTTACACTTATGCGATTCTTGGATCGCTTTGTTTTTAGGAATCCAAAGCAAGCAAAGGGAAAGCAAAACACAGATGCTATTGTGATGCAGCCTAAGTGCAGGAGGACATTCGGTAATGTGCAGCCATTACCTGTTAACAGTGAAGAATATCTGGCCAAAGAGGAGAGTCAGATACCTGTGGATGAGGTGTTCTTCTACAGGTACTTTAAGAAGCGAGATGAGGAGAAACGATGGAAAAAGACTAAACGAAATGAGGACAACGAAAGTGTGGaggatgttgatgatgatgaattTGAGAGGATGCTTGATACGTATGAAGGAGACCGCTTTTTCACCGATTTCAAGGATGATGACTTGGACTTTGCGAGCAGTGTGATGGCTAAGTCTAAGAAAGCTAAAGATCAAGAAGAAGATTctgacgacgatgatgatgatgacgatctTGATGATGAAGAGGTCTCTCTGGGCAGCATGGAAGACTTTGAAGATGAATGTGAGGACGAAGCTGGAGAGTTCATGGACGTAGAAGATGATGCTGAAGCAGGCGATCAACATGgagagaagaaaaagaaaagaaagatgaaGGACCAAGCAGTGTTTGCATCAGCTGAAGAGTTTGGCTGTCTGTTGGATGAAAACGCAGGTCTCAAGTTTGATAACAGCGGCATGAATGCAATGTCCAATGCAGACAAAGCTGGTGTTAAGCAGCTGAAGTGGGAAGCTCAACGCAATGACTGGATCTGTGGTAGAGATGTCAAAACTCTCCGGCGGAGAAAGGCAAATTTCAACAAGAACAAGTTTGGAATGGCCAGAAAGCATAAGAGTGTCAAGAAAACGAGAAGGTAGAATAAAGATGTCTGTTTATACTCGCGCCAGATTGGTGGACCAGACTTCTTGATCTGCTTCATGGATGCATTGACAGTCGCAGTGATGTACAGGAGAGGAGGAACTGCTTTGCTATATTTCTGTATGATTGTGGCTCTACAGTGGTTTAGTCAATATTGgctgttttatacattttcaatGGTTTATCATATCCAGGGGTTTGTCCATGCTTTGGAAAATGC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-261 Predicted to be active in nucleus. Is expressed in optic cup and optic tectum. Orthologous to human CEBPZ (CCAAT enhancer binding protein zeta).

Ensembl:

ensembl_id ENSDARG00000045857 ENSDARG00000094486

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035248 False 495 mRNA 0.40 2 3290188 3290791
TCONS_00035249 True 3366 mRNA 0.46 15 3290231 3310017

Neighbor

gene id symbol gene type direction distance location
XLOC_017839 rps6kc1 coding downstream 13849 3238879 ~ 3276339 (-)
XLOC_017838 spint1b coding downstream 52078 3218893 ~ 3238110 (-)
XLOC_017837 si:ch73-212j7.3 coding downstream 124020 3162423 ~ 3166168 (-)
XLOC_017836 si:ch73-212j7.3 coding downstream 129501 3145497 ~ 3160687 (-)
XLOC_017835 map3k5 coding downstream 203026 3005472 ~ 3087162 (-)
XLOC_017841 marcksa coding upstream 2842 3312859 ~ 3319736 (-)
XLOC_017842 CU570797.6 coding upstream 12587 3322604 ~ 3322820 (-)
XLOC_017843 CU570797.13 coding upstream 13549 3323566 ~ 3323782 (-)
XLOC_017844 CU570797.4 coding upstream 14466 3324483 ~ 3324698 (-)
XLOC_017845 CU570797.7 coding upstream 15429 3325446 ~ 3325661 (-)
XLOC_017928 CU539064.1 misc upstream 6743388 10053405 ~ 10053701 (-)
XLOC_017833 NA non-coding downstream 311104 2975705 ~ 2979084 (-)
XLOC_017831 NA non-coding downstream 564258 2715949 ~ 2725930 (-)
XLOC_017826 BX072559.1 non-coding downstream 791247 2497521 ~ 2498941 (-)
XLOC_017825 NA non-coding downstream 808367 2478216 ~ 2481821 (-)
XLOC_017824 NA non-coding downstream 864828 2416455 ~ 2425360 (-)
XLOC_017846 NA non-coding upstream 16394 3326411 ~ 3326625 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000195_00781053_00802555 CEBPZ coding CI01000195 null 780858 ~ 802555 (-)