XLOC_017839 (rps6kc1)


Basic Information

Item Value
gene id XLOC_017839
gene name rps6kc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 3238879 ~ 3276339 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035247
aatattcatgagctgaTCGTTGGACTGTTGTCTATTGTACGGGTCGTACGTTTTGCTATGGCGATGCGTGTTTCAGGATGATCTCCGCGCGCAACAAAGATGAGATTGTGCGATTCTACACGGTCACCGACCCCACAACACACAAGAAAGGCTACACGGTGTATAAAGTCACGGCCCGGATTATCTCAAGGAACAACCCAGAGGACATTCAGGAGATCACAGTGTGGAAAAGATATAGTGATTTCAAAAAGCTTCATCAAGACCTTTGGCAGATATACAGAAACCTCTGTGGGCAGTCAGAGCTCTTCCCACCCTTCGCCAAAGCTAAAGTTTTTGGTCGTTTTGATGATTCTGTGATTGAAAAGAGAAGGCAGTGCTCGGAGGATTTGTTGCAGTTCAGTGCTAATATTCCTGCTTTATATGGCAGTTCATACATTCAAGATTTCTTTAAgGGTGGAGAGGTACAAGACAGCTCTGAGCTAATTGGACCAGCCGAACCCTTTTCTGATTTTCTAGCTGACAGTCTGTTAGacagcagttctgaagTTTCAGCAGATATCAGTGTTGTGGTGGATGATTTGATCGTGACCAACCCATGTGAACATGAACGCGGCAGCTCTTTCAGCGAGCTGAATTCTTTCGAGGTTGATGGAGACTCTCTGGTTGCTGTGGATGATGGAATGGCATCAGGCAGCCTCAAGCAGTCCAGTCATAGCAGCAGGACACTGAGCTTCGCCTCTGGTCTGAAGAACTGCACAGGAAAACTAGACTACCTAGAAAAGGCCAGCGAGCAGATCTCCCTAGCTGTCCAGAAAGAGGTGGAGCAGGACTTTGCGGAGGCGTTTTCCTACTATCGTAGGGGTGTGGATCTTTTGCTGCAGGGTGTACAAGGAGAGGTGAGTCCCAGCCGGAGGGAGGCTGTGAAGAGGAAGACGGCAGAATATCTGATGCGTGCTGAGCTCATTTCTGCACAGCTCATAGACGGAATGGGACAGAGCTCCACTCAAAGCAGGGCATTGGGATCACAGTGCTGTGGTGGCTCTTGGACTGATCAGACTCACTCCGATGAGCTGAAGCACTACAGAGTGCTGGGTGTTATTGATAAGGTGCTGTTGGTGATGGATAATAGAACACAGGAAACCTTTATTTTGAAAGGTTTAAGAAAAAGCAGTTCATGTGGACGCATTAAGAAGACTATTGTACCTCGAACTGTGCCTAACATGGTACAACTGGAGAAGTACATCATCTCAGAGGACTCCATCTTTCTTTTACTGCAATATGCTGAAGGTGGTCAACTGTGGACACACATCTCCAAATATCTGCATGGCAGCAGTCCAGACGAAAGCGTTAACATGCCTATGATCCAGAAAGTGAACTCTGCAGCTATGCATTCCACCCTGACCCCTGTGCCCACTGGTTCCAGCAGCGCGGATTCTCAGGCCCTAAGCCTCGGGGAGCATCCCTTAGCAGCCCAGCAGCCAGACTCTGGTGGCACCTCTGAAGAGGAGTGTACCAACAGCTATTTGACGCTATGCAACGAGTACGAGCAGGAGAAGCTGGAGCCAGAGGAAGACCATAGCTCATTTAATCCGGCGGATGCACAGAAACACACATCTTTAGTGTTAAACACTGATAGCCTGTGCTCTCCGATTTCAATACAGGAACTGAGCTTTTTCACCGAGGAGGAGCAAATAGCTAGCTTTATGGATCAATCCACAGCATCACCTGACAGTCTGAACCAATCATCGCCCTTGGAGCGCTTCCAGAGTGATAGAAATGATGCCTGTACGGCACTGTTACCTTCGGATGCTGATGTCGAGGTCTTAGAGGAGCCCCTGCAGAAGCCACAGGTTGTGTCAGATCTCTGGAGGGCTGATGGGGATCAGTGCTCAAATGAGTTGGTGCCAGTTATTTCCTTTAAAGAGGCTGTACAGGAGGATGCCACTGTGAGCTGCGCTGTTGAGGGACAACCGCCTGATCTTTTGGTCAATCTTCCGGTGCTCGAAGCGGACACGGTTGAAACAGTAGTAGAAGAGCTTATCGCTTTCAATGCAGTGGCCAAAACTTCTCCTACATTTGGTGGGCCGGATGTCCTACAAGGAGGAGAAAAGGCAGAGTTGGAGCTGCCCATTGATTTGACAACCCTTCCTCTTTACAGACCACCAGCAGCACCCTTTGGAAAAGACTTGATTCCGTCTTCCCCCATGCTGGACGGAGCTATTTCTAAAACTCAGACAGGGTGCGTTGAACATGAAGatttggggttggggttagaaGGCACTTCAGGAGAGCAGGAGGTTGAGGAAGTCTCAAAGTTGTTTcaagaactggataagttggctgcaGTTTCATTAGACACGCATATCCCAGAAGCACTGGTGAGGAGCTGGGCTGCTGACATAGTTGTGGCTCTGGATGCTCTGCACCAGGAGGGAATCATATGCCGAGACCTGAACCCCAGCAACATACTGCTAAACCACACAGGTCGTGTGCAGCTGACCTATTTCTGTAGCTGGAGTGATGTTGAGGAGTCATGTGACCCTAATGCCATCTCTAAGATGTACTGTGCACCAGAAGTGGGCGGAATCTGTGAAGAGACGGTAGCATCTGATTGGTGGAGTTTGGGAGCCCTTTTATTTGAACTCATAGTTGGAAAGTCTCTATACCAGTGTCATCCTGCTGGCATTGGTAGACACTCATCGCTGAACATCCCAGAGTTTGTGTCGGAGGAGGCACGGTCTCTGATGGAACAGttGTTGCAGTATAATCCAGTGGAGCGGCTTGGCGCTGGAGTAGCTGGTGTGGAGGATATCAAGTCTCATCCGTTTTTTTCTCATGTCAACTGGACTAATTAATTTATCAGATCATTTACTGGAACGAGATGAAAGATTGAAATGTGTCTCTATGTAACACATGCAATGCTGCAAAACACAAGCTTATTCCACATAACTTTGCCAATAGATGATCAAAGTTTAAAGTGCGTTGTTTTAAAAtgcacctttttttaaaaatcggaCTAATTTACAACATGTCACTATTAGTTTCATTTATAGTGTGATTACAGGAAGCCGCTAGCATCACACAGACATCTTTAGCGTGCGAGAAGGTTCAATCCTAGTCATTTCTTTTGGAAAAATCCTCATCAAACTCTACATACTGTGCACTAATCcatcatgttatttattaaaacactCTTATTGTCTGTTGGATGATATTGGTTCATTCATTTGATGTGTTTCTTTCTCAAGGTGATTCTCACTCTTGAAGGCTGCAtttgtaaaattaatataataaacatatattaAGAGGTGCTGGCAGATTAACTTTGTTTGTCTGTGAATCATTTTAAAAGATGTGGGGCTGACAAGAGTTCAAGTGCAATTTGTTGAACAATGGGAATACATATGACTGTGTGATTTAAAGTatg

Function

symbol description
rps6kc1 Predicted to enable ATP binding activity; phosphatidylinositol binding activity; and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in early endosome. Is expressed in central nervous system and retina. Orthologous to human RPS6KC1 (ribosomal protein S6 kinase C1).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005769 early endosome cellular_component
GO:0005524 ATP binding molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081031-83 Predicted to enable ATP binding activity; phosphatidylinositol binding activity; and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in early endosome. Is expressed in central nervous system and retina. Orthologous to human RPS6KC1 (ribosomal protein S6 kinase C1).

Ensembl:

ensembl_id ENSDARG00000104103

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035247 True 3427 mRNA 0.46 16 3238879 3276339

Neighbor

gene id symbol gene type direction distance location
XLOC_017838 spint1b coding downstream 769 3218893 ~ 3238110 (-)
XLOC_017837 si:ch73-212j7.3 coding downstream 72711 3162423 ~ 3166168 (-)
XLOC_017836 si:ch73-212j7.3 coding downstream 78192 3145497 ~ 3160687 (-)
XLOC_017835 map3k5 coding downstream 151717 3005472 ~ 3087162 (-)
XLOC_017834 ppil4 coding downstream 234753 2982381 ~ 3004126 (-)
XLOC_017840 si:ch1073-412h12.3 coding upstream 13849 3290188 ~ 3310017 (-)
XLOC_017841 marcksa coding upstream 36520 3312859 ~ 3319736 (-)
XLOC_017842 CU570797.6 coding upstream 46265 3322604 ~ 3322820 (-)
XLOC_017843 CU570797.13 coding upstream 47227 3323566 ~ 3323782 (-)
XLOC_017844 CU570797.4 coding upstream 48144 3324483 ~ 3324698 (-)
XLOC_017928 CU539064.1 misc upstream 6777066 10053405 ~ 10053701 (-)
XLOC_017833 NA non-coding downstream 259795 2975705 ~ 2979084 (-)
XLOC_017831 NA non-coding downstream 512949 2715949 ~ 2725930 (-)
XLOC_017826 BX072559.1 non-coding downstream 739938 2497521 ~ 2498941 (-)
XLOC_017825 NA non-coding downstream 757058 2478216 ~ 2481821 (-)
XLOC_017824 NA non-coding downstream 813519 2416455 ~ 2425360 (-)
XLOC_017845 CU570797.7 non-coding upstream 49107 3325446 ~ 3325661 (-)
XLOC_017846 NA non-coding upstream 50072 3326411 ~ 3326625 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000195_00573866_00614603 RPS6KC1 coding CI01000195 null 573866 ~ 614634 (+)