XLOC_017810 (ankrd6b)


Basic Information

Item Value
gene id XLOC_017810
gene name ankrd6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1203238 ~ 1239603 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035197
ATGTTTATCAAACGCTCCTCTTTCCCACGCGCCAGTTTGCGGAGTATTGCTTATTTCGGAGGAGAACAGCAGTAACAGTCTGCGGGAGGGAGAGTTCACGAGAATATCCGCAGCAGTGCAGGATTCTCTTCAGGACATGAGGGCTGGATCCCTCCACGCGCTGGACATCTATGGTTCGTCTCTTCTCTCATCCCGTGGCCGAGGGACTGGTTCCCGTTGTGTGAGCGCAGCAGTGAGTCTCCCCCTGATTCATGAGCCAGCGCGATGCCTCCTGTGTGCGGGCTCTCTCTGAGCGTCTCCTCATAGCCTCGCACAAGGGCCAGGCCGACCATGTGGTGCAGCTCATCAACAGAGGCGCCAAGGTAGCCATTACCAAGaacGGCAGGACGCCTCTGCATCTGGCTGCCTATAAAGGCCACATTGCTGTGGTGAGGATTCTGCTCGCCGCTGGTTGTGACCTGGACATTGAGGACGATGGTGACCAGACGGCTTTACACAGAGCAGCGGTGGTGGGAAACACAGATGTCATTTCAGCCCTCGTTCAGGAAGGATGCGCACTAGATAGACAAGACAAGGATGGGAACACCGCTCTTCATGAGGCTGCATGGCACGGCTTCAGTCAGACTGTGAAGCTGCTGGTGAAGGCTGGAGCAAACGTTCACGCCAAGAACAAGGCTGGAAACACGGCTCTTCATCTGGCCTGTCAGAACGGTCATGTTCAGAGCTGTAGAGTCCTGCTGCTGGGCGGCTCTCGGCCCGACTCCAAGAACAGTGTAGGCGACACGTGTCTGCATGTGTCTGCCAGATATAACCACGTGAGCGTGATCCGAGCGCTCCTGGGCGCCATCTGCTCCGTCACTGACAGAAATCACACAGGGGACACGGCTCTGCACATCGCAGCAACTCTGAACCACAGGAAGACCGTACGCATGCTGCTGGAGGCTGGAGCCGACAGCCGCATCAAAAACAACacaggTGAGACGGCCCTCGATCAGGCTCGTGAAAACAACAGTCCTGAAGTGGCGCTGCTGCTCACCAAAGCCCCGCAGGCAGAGCTTCAGTCGAGGACGCACCGTGAGGAAGAGGAGGGACAAGATGAAGACGGAGGGTCGAGCACAGTCTGTCCCGCGGGATGAGATGCTGCCGAGAAAGtgtgacAGTGCTTCTCCAGCCCAGGACACTCACGGCAGTGACGGCTCTCTCCGCCGCACAGACAACATGTTTCTCACAGAGCCACGAACAAACAAAAACTGCCACAGGAAAGCCAGAGACAGGcTGTCTCCATCAGATGCCCTCATTCACAGACCAAATAAACAGAGCGATCCTAAGAAGAAGAGTAAGACGGAGAGATCGTCTCCATCAGccgttcctcctcctcctcctcataaCTACAAGGCGTATCAGCTCTACACTCTCTACAGAGGAAAAGACGGAAAGATCATGCAGGCTCCTCTAAACGGCTGCAGATGTGAGCCGCTCATCAGTAAGCTGGAGAATCAGCTGATGGCCACTAAAGAGGAGATGCAGTCGGAGATCCACACCGTACAGGAGCTCATGAACAGCAAGATCGGCCAGATGGACCGCAAGAGCAAACATCAGATCAGAGCTCTGGACAAGATGACATTAGAGCGAGTGTCTGCAGAGAGGATCGAGTGTTTACACCGCATCGACAAGAGAGCTGTGCAGGAGCGTCTAGAGGCCGAGAAACGACAGACATCAGTGGTGAAGGATCTGAAGAACTGGTGTCTTTCTAAGATCCAGAGTTTGGAGACTCGTCTCTCAGGTGAGCGTGTGGACAGCAGGTTACAGCGCTCCTCGTCCCTCACAGACACACTGTCGGACTGCACCCCCGTCCTGGAGCCGTCTAGAGCAGCCCCGCACCCGTCTCCATCAGCAGAGCCCACAGATGCAGGAGAGACGGCCGCCGCCAGCTCCTGTGCTGAGGACGCTCCGGCCAGATACTACGTGATAGAGGTGGACGCATCAGCAGACAAGCCCTCGTCCCAGAATCAGTCTGCGCCTCAGTCTCCTTGTATAGTGCGTCCTAAGCAGCGCTCGAGGGCCTGCAGTGACCCTCACCAGCTGCGGGACGAGTCTGAGGAGCGCAGTGTGGAGCCCAGACCTGCAGCCGAGCACAGGACCATCAGGAGACACAGAGCCAAGAGCAAACCCAGCGCTCAGAGCCTGACGCTACAGACCTGTCCTGCCGCCGCAGAAGGGGCGTTCGCGCAGGAGCGGGACAACATGCATGCGCTGGAGGTCACGCAGTACTTCTTCGAGGCGGTGACCCTGCAGATGGAGCGCTGGTACGAGAGGAAGATCGAGGAGACGCGGAGGCAGGCCGACCACAGGGTGCAGGCCGACAGAGAGCTGCTGCTGGACCGAATACAACACCTGGAGGACGAGCTGCGCCTGCTCAGGATGAACACACAAGACGGATAGACAAACACTGGAGGAAAGACTTCTGGAGGAAACACTTCTGGAGGAAAGACTTCTGGAGGAAGGACTGGAGGAAACACTTCTGGAGGAAACACTTCTGGAGGAAACTTCTGGAGAAAGGACTGGAGGAAACACTTCTGGAGGAAACACTTCTGGAGGAAACACTTCTGGAGGAAACACTTCTGGAGGAAGGACTGGAGGAAAGACTTCTGGAGGAAAGACTTCTGGAGCAAGGACTTGAGGAAAGACTTCTGGAGGAAACACTTCTGGAGGAAGGACTGGAGGAAAGACTTCTGGAGGAAACCCTTCTGGAGGAAACCCTT
>TCONS_00035198
TCGGATCATGTTTATCAAACGCTCCTCTTTCCCACGCGCCAGTTTGCGGAGTATTGCTTATTTCGGAGGAGAACAGCAGTAACAGTCTGCGGGAGGGAGAGTTCACGAGAATATCCGCAGCAGTGCAGGATTCTCTTCAGGACATGAGGGCTGGATCCCTCCACGCGCTGGACATCTATGGTTCGTCTCTTCTCTCATCCCGTGGCCGAGGGACTGGTTCCCGTTGTGTGAGCGCAGCAGTGAGTCTCCCCCTGATTCATGAGCCAGCGCGATGCCTCCTGTGTGCGGGCTCTCTCTGAGCGTCTCCTCATAGCCTCGCACAAGGGCCAGGCCGACCATGTGGTGCAGCTCATCAACAGAGGCGCCAAGGTAGCCATTACCAAGaacGGCAGGACGCCTCTGCATCTGGCTGCCTATAAAGGCCACATTGCTGTGGTGAGGATTCTGCTCGCCGCTGGTTGTGACCTGGACATTGAGGACGATGGTGACCAGACGGCTTTACACAGAGCAGCGGTGGTGGGAAACACAGATGTCATTTCAGCCCTCGTTCAGGAAGGATGCGCACTAGATAGACAAGACAAGGATGGGAACACCGCTCTTCATGAGGCTGCATGGCACGGCTTCAGTCAGACTGTGAAGCTGCTGGTGAAGGCTGGAGCAAACGTTCACGCCAAGAACAAGGCTGGAAACACGGCTCTTCATCTGGCCTGTCAGAACGGTCATGTTCAGAGCTGTAGAGTCCTGCTGCTGGGCGGCTCTCGGCCCGACTCCAAGAACAGTGTAGGCGACACGTGTCTGCATGTGTCTGCCAGATATAACCACGTGAGCGTGATCCGAGCGCTCCTGGGCGCCATCTGCTCCGTCACTGACAGAAATCACACAGGGGACACGGCTCTGCACATCGCAGCAACTCTGAACCACAGGAAGACCGTACGCATGCTGCTGGAGGCTGGAGCCGACAGCCGCATCAAAAACAACacaggTGAGACGGCCCTCGATCAGGCTCGTGAAAACAACAGTCCTGAAGTGGCGCTGCTGCTCACCAAAGCCCCGCAGAGCTTCAGTCGAGGACGCACCGTGAGGAAGAGGAGGGACAAGATGAAGACGGAGGGTCGAGCACAGTCTGTCCCGCGGGATGAGATGCTGCCGAGAAAGtgtgacAGTGCTTCTCCAGCCCAGGACACTCACGGCAGTGACGGCTCTCTCCGCCGCACAGACAACATGTTTCTCACAGAGCCACGAACAAACAAAAACTGCCACAGGAAAGCCAGAGACAGGcTGTCTCCATCAGATGCCCTCATTCACAGACCAAATAAACAGAGCGATCCTAAGAAGAAGAGTAAGACGGAGAGATCGTCTCCATCAGccgttcctcctcctcctcctcataaCTACAAGGCGTATCAGCTCTACACTCTCTACAGAGGAAAAGACGGAAAGATCATGCAGGCTCCTCTAAACGGCTGCAGATGTGAGCCGCTCATCAGTAAGCTGGAGAATCAGCTGATGGCCACTAAAGAGGAGATGCAGTCGGAGATCCACACCGTACAGGAGCTCATGAACAGCAAGATCGGCCAGATGGACCGCAAGAGCAAACATCAGATCAGAGCTCTGGACAAGATGACATTAGAGCGAGTGTCTGCAGAGAGGATCGAGTGTTTACACCGCATCGACAAGAGAGCTGTGCAGGAGCGTCTAGAGGCCGAGAAACGACAGACATCAGTGGTGAAGGATCTGAAGAACTGGTGTCTTTCTAAGATCCAGAGTTTGGAGACTCGTCTCTCAGGTGAGCGTGTGGACAGCAGGTTACAGCGCTCCTCGTCCCTCACAGACACACTGTCGGACTGCACCCCCGTCCTGGAGCCGTCTAGAGCAGCCCCGCACCCGTCTCCATCAGCAGAGCCCACAGATGCAGGAGAGACGGCCGCCGCCAGCTCCTGTGCTGAGGACGCTCCGGCCAGATACTACGTGATAGAGGTGGACGCATCAGCAGACAAGCCCTCGTCCCAGAATCAGTCTGCGCCTCAGTCTCCTTGTATAGTGCGTCCTAAGCAGCGCTCGAGGGCCTGCAGTGACCCTCACCAGCTGCGGGACGAGTCTGAGGAGCGCAGTGTGGAGCCCAGACCTGCAGCCGAGCACAGGACCATCAGGAGACACAGAGCCAAGAGCAAACCCAGCGCTCAGAGCCTGACGCTACAGACCTGTCCTGCCGCCGCAGAAGGGGCGTTCGCGCAGGAGCGGGACAACATGCATGCGCTGGAGGTCACGCAGTACTTCTTCGAGGCGGTGACCCTGCAGATGGAGCGCTGGTACGAGAGGAAGATCGAGGAGACGCGGAGGCAGGCCGACCACAGGGTGCAGGCCGACAGAGAGCTGCTGCTGGACCGAATACAACACCTGGAGGACGAGCTGCGCCTGCTCAGGATGAACACACAAGACGGATAGACAAACACTGGAGGAAAGACTTCTGGAGGAAACACTTCTGGAGGAAGGACTGGAGGAAACACTTCTGGAGGAAAGACTTCTGGAGGAAACACTTCTGGAGGAAATACTTCTGGAGGAAGGACTGGAGGAAACACTTCTGGAGGAAACACTTCTGGAGGAAACACTTCTGGAGGAAACACTTCTGGAGGAAACACTTCTGGAGGAAACTTCTGGAGGAAGGACTGGAGGAAAGACTTCTGGAGGAAAGACTTCTGGAGCAAGGACTTGAGGAAAGACTTCTGGAGGAAACCCTTCTGGAGGAAAGACTT
>TCONS_00035199
TCGGATCATGTTTATCAAACGCTCCTCTTTCCCACGCGCCAGTTTGCGGAGTATTGCTTATTTCGGAGGAGAACAGCAGTAACAGTCTGCGGGAGGGAGAGTTCACGAGAATATCCGCAGCAGTGCAGGATTCTCTTCAGGACATGAGGGCTGGATCCCTCCACGCGCTGGACATCTATGGTTCGTCTCTTCTCTCATCCCGTGGCCGAGGGACTGGTTCCCGTTGTGTGAGCGCAGCAGTGAGTCTCCCCCTGATTCATGAGCCAGCGCGATGCCTCCTGTGTGCGGGCTCTCTCTGAGCGTCTCCTCATAGCCTCGCACAAGGGCCAGGCCGACCATGTGGTGCAGCTCATCAACAGAGGCGCCAAGGTAGCCATTACCAAGGTCAGTGCAGCGCTTTTCTTAAACCTTTTAGTAGAAAGTTCAGAAGTATTTATAACGTCACTTGATTCGTTTTTAAAAAGGCAAACTTAAACCGCTATTACAGCTAAAACCGAGTCATAAataataggggtgtaacgatacactcagctcacgatacgatgtgtatcacgatataatgttcacggttcgatatgtatcacgatatttggaataa

Function

symbol description
ankrd6b Acts upstream of or within several processes, including determination of ventral identity; gastrulation; and regulation of signal transduction. Predicted to be active in cytoplasm and nucleus. Is expressed in liver. Orthologous to human ANKRD6 (ankyrin repeat domain 6).

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007507 heart development biological_process
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0046330 positive regulation of JNK cascade biological_process
GO:0048264 determination of ventral identity biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0005634 nucleus cellular_component
GO:0030877 beta-catenin destruction complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008013 beta-catenin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030916-4 Acts upstream of or within several processes, including determination of ventral identity; gastrulation; and regulation of signal transduction. Predicted to be active in cytoplasm and nucleus. Is expressed in liver. Orthologous to human ANKRD6 (ankyrin repeat domain 6).

Ensembl:

ensembl_id ENSDARG00000029370

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035197 False 2762 mRNA 0.56 18 1203238 1239596
TCONS_00035198 False 2753 mRNA 0.56 16 1203605 1239603
TCONS_00035199 True 598 processed_transcript 0.49 2 1229788 1239603

Neighbor

gene id symbol gene type direction distance location
XLOC_017809 BX248418.2 coding downstream 4529 1198079 ~ 1198709 (-)
XLOC_017808 ube2j1 coding downstream 11328 1177751 ~ 1191910 (-)
XLOC_017807 gabrr2b coding downstream 26607 1158393 ~ 1176631 (-)
XLOC_017806 gabrr1 coding downstream 51973 1132092 ~ 1151265 (-)
XLOC_017805 rngtt coding downstream 83182 943879 ~ 1120056 (-)
XLOC_017811 lats1 coding upstream 858 1240461 ~ 1268869 (-)
XLOC_017812 pcmt coding upstream 54385 1293988 ~ 1314537 (-)
XLOC_017813 scara5 coding upstream 115092 1354695 ~ 1383916 (-)
XLOC_017814 themis coding upstream 183589 1423192 ~ 1439256 (-)
XLOC_017815 ptprk coding upstream 201945 1441548 ~ 1560849 (-)
XLOC_017928 CU539064.1 misc upstream 8813802 10053405 ~ 10053701 (-)
XLOC_017799 NA non-coding downstream 669162 530511 ~ 534076 (-)
XLOC_017795 NA non-coding downstream 791319 408561 ~ 411919 (-)
XLOC_017794 NA non-coding downstream 797872 403316 ~ 405366 (-)
XLOC_017787 NA non-coding downstream 1086239 84692 ~ 116999 (-)
XLOC_017817 NA non-coding upstream 505622 1745225 ~ 1763478 (-)
XLOC_017819 NA non-coding upstream 819335 2058938 ~ 2090789 (-)
XLOC_017821 NA non-coding upstream 896292 2135895 ~ 2140246 (-)
XLOC_017822 NA non-coding upstream 1047069 2286672 ~ 2288716 (-)
XLOC_017824 NA non-coding upstream 1176852 2416455 ~ 2425360 (-)

Expression


Co-expression Network