XLOC_017799


Basic Information

Item Value
gene id XLOC_017799
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 530511 ~ 534076 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036780
CTTAAaccttatgtttttttattattattttttattcggCACATATGAACACCTTCCCTGCACTCAATGAACTATTGCTACTCACAACATACAGCAGAGGAgacactttgttttttttatttgagaaaaATAGGTCACCATGCTTACGATGAGGATTTCCACCCTTCTGTCGCCGCTGCGAAGAGCTGCCTAGCGCCCCCTAGCTCAGTTTCAGGCACGTTTCTGTAACAATCGTAACTTGCAGCGTCTCTAAAAGCCACCATAGCAGAATCCTCATCAGAGCACTCCACATGAAAACACCAAATCCACTGACATTGCTGGAAACAGATCATTATTAAAGCTCAGGGCCGGCACACAAATGAGTCGGTGAGACACGTGCCCTGACACATAAAACCACTGGATGGGTGAATAAAGCTTGGCACCATTCCTGTGCATGACAGACTCTTTACATTGACCATCACATTAATTTTACACAATGTTACAACAACAGTACATACACAggagaatgaataataataaacacacaccACTCTTCATTCGAAAACAGTGAAGACCTGAAACAAAAGGCATTTAGGAGGAAGAGTTCAACCAAAAACGAAAAGCCGCACTAGACTCACCTTGAGCAGCTCCAAATGACTTCATGCCTGGGAACAAATCAATGTGATATATTCCCAGAATCCAAAACATTCTTAATCCTAatgcatttaaagtattttaatcttttaatatttaacaaaatagtAATCAATATTCCCTAATCAACCtccattaaaggggtggtccactatgatgtTAGACTGTAGTTGATGTGTAgcgtagctgtgtgaacatataCAACATCTATGAAGATGCAAAGGGAGAcgttggcttttacagagttagcttaacaaagcctacagcgaacgaactttgcaaatacatccgggttaatgatgtcataaaccttTCAGGTTACGTACACACACCCTGTGCagtgaaggggcgtggccagattCTGTAATGTTACAGGAGAGACAGCTAGAATGGCGTCCAAACGCTGCTGTTTCCAGAAGACACatagagagaagtgcttacaatttaatttaataatgctcCAGAGAACTAAAAAcagatatagctctagcatttgacaaaggagagcttctagaatctctcccagtttagtgctggattcagctgaaACTCTtcaaaggagcagctccaaccataatagcagAAGCTGCGTATTGTGAGCcacaattttcactttttgtaggATTAAAAGTCTTGAAAtatttgagcgagatgctaacggtctaatccaaaTCAATGattcatgctaagctaagctaaaagtgctatcACCAGACATTTGTGTGCCAATAACAGCACAATGCTTTCACCATGCCGAGAAAATAATGCTGTTTTCTAGTTTTAGCTAAACTATTCCTCTAATACTCTTCCGGTGTTATAGGAGGATGTCCATTTCTTCTTTTATCACAGAAATGTGTAGTACAGTACATCGAAGACCCTGAAATCATAATCAAATGGTGGAAAAATAAAACCGAGCACACAATAAACTTGCAGGTTACGACACTTAAAAACATCCAACAATCACGAAGAAACAAAGACCTCACGGCTGTTTCTGGATTGCATGAATACAATTTGTGCTTGCTTTCTCGCAGAAAGCGTTTTCAAGAACAGATCCTCTGAGGTAACATTCCCTTCATGAAATcagagtaaaacacacacacacagctcaccgAAAGGCTGTGCTCTTTTCGGTACACCATTAAAAGTAGTTTAATGGTAGTGAGCGCTGGATGAGACACAATACACTGTGACTTCCTATTCAGCATGTACCGTATACAGACACCACTTCAGACTGTGTAATACCGCGGTGATCCGGGAAGAGGTGAGGAGGAGGCACACA
>TCONS_00036781
gtttttttattattattttttattcggCACATATGAACACCTTCCCTGCACTCAATGAACTATTGCTACTCACAACATACAGCAGAGGAgacactttgttttttttatttgagaaaaATAGGTCACCATGCTTACGATGAGGATTTCCACCCTTCTGTCGCCGCTGCGAAGAGCTGCCTAGCGCCCCCTAGCTCAGTTTCAGGCACGTTTCTGTAACAATCGTAACTTGCAGCGTCTCTAAAAGCCACCATAGCAGAATCCTCATCAGAGCACTCCACATGAAAACACCAAATCCACTGACATTGCTGGAAACAGATCATTATTAAAGCTCAGGGCCGGCACACAAATGAGTCGGTGAGACACGTGCCCTGACACATAAAACCACTGGATGGGTGAATAAAGCTTGGCACCATTCCTGTGCATGACAGACTCTTTACATTGACCATCACATTAATTTTACACAATGTTACAACAACAGTACATACACAggagaatgaataataataaacacacaccACTCTTCATTCGAAAACAGTGAAGACCTGAAACAAAAGGCATTTAGGAGGAAGAGTTCAACCAAAAACGAAAAGCCGCACTAGACTCACCTTGAGCAGCTCCAAATGACTTCATGCCTGGGAACAAATCAATGTGATATATTCCCAGAATCCAAAACATTCTTAATCCTAatgcatttaaagtattttaatcttttaatatttaacaaaatagtAATCAATATTCCCTAATCAACCtccattaaaggggtggtccactatgatgtTAGACTGTAGTTGATGTGTAgcgtagctgtgtgaacatataCAACATCTATGAAGATGCAAAGGGAGAcgttggcttttacagagttagcttaacaaagcctacagcgaacgaactttgcaaatacatccgggttaatgatgtcataaaccttTCAGGTTACGTACACACACCCTGTGCagtgaaggggcgtggccagattCTGTAATGTTACAGGAGAGACAGCTAGAATGGCGTCCAAACGCTGCTGTTTCCAGAAGACACatagagagaagtgcttacaatttaatttaataatgctcCAGAGAACTAAAAAcagatatagctctagcatttgacaaaggagagcttctagaatctctcccagtttagtgctggattcagctgaaACTCTtcaaaggagcagctccaaccataatagcagAAGCTGCGTATTGTGAGCcacaattttcactttttgtaggATTAAAAGTCTTGAAATATTTGAGCGAGaagctaacggtctaatccgattcaatgatttatg
>TCONS_00036782
ttcggCACATATGAACACCTTCCCTGCACTCAATGAACTATTGCTACTCACAACATACAGCAGAGGAgacactttgttttttttatttgagaaaaATAGGTCACCATGCTTACGATGAGGATTTCCACCCTTCTGTCGCCGCTGCGAAGAGCTGCCTAGCGCCCCCTAGCTCAGTTTCAGGCACGTTTCTGTAACAATCGTAACTTGCAGCGTCTCTAAAAGCCACCATAGCAGAATCCTCATCAGAGCACTCCACATGAAAACACCAAATCCACTGACATTGCTGGAAACAGATCATTATTAAAGCTCAGGGCCGGCACACAAATGAGTCGGTGAGACACGTGCCCTGACACATAAAACCACTGGATGGGTGAATAAAGCTTGGCACCATTCCTGTGCATGACAGACTCTTTACATTGACCATCACATTAATTTTACACAATGTTACAACAACAGTACATACACAggagaatgaataataataaacacacaccACTCTTCATTCGAAAACAGTGAAGACCTGAAACAAAAGGCATTTAGGAGGAAGAGTTCAACCAAAAACGAAAAGCCGCACTAGACTCACCTTGAGCAGCTCCAAATGACTTCATGCCTGGGAACAAATCAATGTGATATATTCCCAGAATCCAAAACATTCTTAATCCTAatgcatttaaagtattttaatcttttaatatttaacaaaatagtAATCAATATTCCCTAATCAACCtccattaaaggggtggtccactatgatgtTAGACTGTAGTTGATGTGTAgcgtagctgtgtgaacatataCAACATCTATGAAGATGCAAAGGGAGAcgttggcttttacagagttagcttaacaaagcctacagcgaacgaactttgcaaatacatccgggttaatgatgtcataaaccttTCAGGTTACGTACACACACCCTGTGCagtgaaggggcgtggccagattCTGTAATGTTACAGGAGAGACAGCTAGAATGGCGTCCAAACGCTGCTGTTTCCAGAAGACACatagagagaagtgcttacaatttaatttaataatgctcCAGAGAACTAAAAAcagatatagctctagcatttgacaaaggagagcttctagaatctctcccagtttagtgctggattcagctgaaACTCTtcaaaggagcagctccaaccataatagcagAAGCTGCGTATTGTGAGCcacaattttcactttttgtaggATTAAAAGTCTTGAAATATTTGAGCGAga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036780 False 1912 lncRNA 0.41 2 530511 534076
TCONS_00036781 False 1306 lncRNA 0.40 2 531290 534064
TCONS_00036782 True 1251 lncRNA 0.41 2 531502 534042

Neighbor

gene id symbol gene type direction distance location
XLOC_017798 col10a1b coding downstream 42728 484256 ~ 487783 (-)
XLOC_017797 frk coding downstream 66725 441942 ~ 463786 (-)
XLOC_017796 ufl1 coding downstream 91865 418513 ~ 438646 (-)
XLOC_017795 NA coding downstream 118592 408561 ~ 411919 (-)
XLOC_017794 NA coding downstream 125145 403316 ~ 405366 (-)
XLOC_017800 prkg3 coding upstream 82038 616114 ~ 641511 (-)
XLOC_017801 impg1a coding upstream 244532 778608 ~ 791788 (-)
XLOC_017802 impg1a coding upstream 269032 803108 ~ 805245 (-)
XLOC_017803 snx14 coding upstream 317507 851583 ~ 894374 (-)
XLOC_017804 cnr1 coding upstream 368336 902412 ~ 915234 (-)
XLOC_017928 CU539064.1 misc upstream 9519329 10053405 ~ 10053701 (-)
XLOC_017787 NA non-coding downstream 413512 84692 ~ 116999 (-)
XLOC_017809 BX248418.2 non-coding upstream 664003 1198079 ~ 1198709 (-)
XLOC_017817 NA non-coding upstream 1211149 1745225 ~ 1763478 (-)
XLOC_017819 NA non-coding upstream 1524862 2058938 ~ 2090789 (-)
XLOC_017821 NA non-coding upstream 1601819 2135895 ~ 2140246 (-)
XLOC_017822 NA non-coding upstream 1752596 2286672 ~ 2288716 (-)

Expression


Co-expression Network