RNA id: TCONS_00036782


Basic Information

Item Value
RNA id TCONS_00036782
length 1251
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_017799
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 530511 ~ 534076 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttcggCACATATGAACACCTTCCCTGCACTCAATGAACTATTGCTACTCACAACATACAGCAGAGGAgacactttgttttttttatttgagaaaaATAGGTCACCATGCTTACGATGAGGATTTCCACCCTTCTGTCGCCGCTGCGAAGAGCTGCCTAGCGCCCCCTAGCTCAGTTTCAGGCACGTTTCTGTAACAATCGTAACTTGCAGCGTCTCTAAAAGCCACCATAGCAGAATCCTCATCAGAGCACTCCACATGAAAACACCAAATCCACTGACATTGCTGGAAACAGATCATTATTAAAGCTCAGGGCCGGCACACAAATGAGTCGGTGAGACACGTGCCCTGACACATAAAACCACTGGATGGGTGAATAAAGCTTGGCACCATTCCTGTGCATGACAGACTCTTTACATTGACCATCACATTAATTTTACACAATGTTACAACAACAGTACATACACAggagaatgaataataataaacacacaccACTCTTCATTCGAAAACAGTGAAGACCTGAAACAAAAGGCATTTAGGAGGAAGAGTTCAACCAAAAACGAAAAGCCGCACTAGACTCACCTTGAGCAGCTCCAAATGACTTCATGCCTGGGAACAAATCAATGTGATATATTCCCAGAATCCAAAACATTCTTAATCCTAatgcatttaaagtattttaatcttttaatatttaacaaaatagtAATCAATATTCCCTAATCAACCtccattaaaggggtggtccactatgatgtTAGACTGTAGTTGATGTGTAgcgtagctgtgtgaacatataCAACATCTATGAAGATGCAAAGGGAGAcgttggcttttacagagttagcttaacaaagcctacagcgaacgaactttgcaaatacatccgggttaatgatgtcataaaccttTCAGGTTACGTACACACACCCTGTGCagtgaaggggcgtggccagattCTGTAATGTTACAGGAGAGACAGCTAGAATGGCGTCCAAACGCTGCTGTTTCCAGAAGACACatagagagaagtgcttacaatttaatttaataatgctcCAGAGAACTAAAAAcagatatagctctagcatttgacaaaggagagcttctagaatctctcccagtttagtgctggattcagctgaaACTCTtcaaaggagcagctccaaccataatagcagAAGCTGCGTATTGTGAGCcacaattttcactttttgtaggATTAAAAGTCTTGAAATATTTGAGCGAga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035176 lncRNA downstream 99206 430001 ~ 432296 (-) True XLOC_017796
TCONS_00036779 lncRNA downstream 119583 408561 ~ 411919 (-) True XLOC_017795
TCONS_00036778 lncRNA downstream 126136 403316 ~ 405366 (-) True XLOC_017794
TCONS_00036777 lncRNA downstream 348721 182349 ~ 182781 (-) True XLOC_017790
TCONS_00036439 lncRNA downstream 414530 84693 ~ 116972 (-) False XLOC_017787
TCONS_00035187 lncRNA upstream 348409 882451 ~ 885360 (-) True XLOC_017803
TCONS_00035196 lncRNA upstream 664037 1198079 ~ 1198709 (-) True XLOC_017809
TCONS_00035212 lncRNA upstream 920108 1454150 ~ 1463535 (-) True XLOC_017815
TCONS_00036440 lncRNA upstream 1101590 1635632 ~ 1725104 (-) True XLOC_017816
TCONS_00036441 lncRNA upstream 1211183 1745225 ~ 1763478 (-) True XLOC_017817
TCONS_00035179 mRNA downstream 43719 484256 ~ 487783 (-) True XLOC_017798
TCONS_00035178 mRNA downstream 67716 442616 ~ 463786 (-) True XLOC_017797
TCONS_00035177 mRNA downstream 74504 441942 ~ 456998 (-) False XLOC_017797
TCONS_00035175 mRNA downstream 92856 418513 ~ 438646 (-) False XLOC_017796
TCONS_00035174 mRNA downstream 246637 276753 ~ 284865 (-) True XLOC_017793
TCONS_00035180 mRNA upstream 82072 616114 ~ 641511 (-) False XLOC_017800
TCONS_00035181 mRNA upstream 82711 616753 ~ 630637 (-) True XLOC_017800
TCONS_00035182 mRNA upstream 244566 778608 ~ 791788 (-) True XLOC_017801
TCONS_00035183 mRNA upstream 269066 803108 ~ 805245 (-) True XLOC_017802
TCONS_00035185 mRNA upstream 317541 851583 ~ 894374 (-) False XLOC_017803
TCONS_00035199 other upstream 695746 1229788 ~ 1239603 (-) True XLOC_017810
TCONS_00035230 other upstream 2155506 2689548 ~ 2708120 (-) False XLOC_017830
TCONS_00035232 other upstream 2181907 2715949 ~ 2725519 (-) False XLOC_017831
TCONS_00035252 other upstream 2788562 3322604 ~ 3322820 (-) True XLOC_017842
TCONS_00035253 other upstream 2789524 3323566 ~ 3323782 (-) True XLOC_017843