XLOC_017801 (impg1a)


Basic Information

Item Value
gene id XLOC_017801
gene name impg1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 778608 ~ 791788 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035182
ATTCATTTAAAGGAGTTAGATCAGATCGATGTAGTAGGTACCGAGACCATTGACCTCTTGAGTTACGACAACGGTTATTCTTTCCCCAATGAAGGATTTCCTTTAGAGACGACAAAAATGCCATCGCTGAAGTACTTCACAACTCCCTCCATGACCACAGCTAGCAAAGGCCGAGAGCTAGTTGTGTTTTTCAGTCTGCGCGTTACGAACATGGTGTTTTCTGAAGACCTTTTCAACAAGAGCTCAACAGAGTACCGGTCACTGGAAAACAGATTTGTCGAACTGCTGCTGCCGTATCTACAGTCTAACCTGACAGGCTTCAAGCAGTTGGAAATCCTAAACTTCAGAAACGGGAGTGTGGTGGTCAACAGCAAGGCCAAATTCGCCAAGTCTGTGCCATACAACATCACTCAGGCCGTCCAGCAGGTCTTGGAGAACTTCTGTGACGCCGCAGCTCAGCGTTTGGACATCAACATTGACAGCCATTCCCTGGACATTGAACCAGCCGATGAAGGCGACCCTTGCAAGTTTCTGGCCTGCAACGAGTTTTCCAGATGCGTGGTGAACCAGTGGACCAAGGAAGCGCAGTGTTTGTGTGAGCCAGGCTACATGGCGGTGGACGGCCTGCCGTGTCAGAGCCTCTGTGTGCTCCAGCCTGATTTCTGCCTCAGCGGAGGGCAGTGTGAGATTGTGCCAGGGCATGGTGCCGCTTGCAGAGGCCGAGAGCAAACCACCATCCCAGGCCTGAGCAGCTAATCACAGATGACTTACACTAATTACCACATCACTGAGAGCTGAGGCGCCACACGGCACGCTGTCCTGCTCAAAAGAGGATGAAGATCTCACAGCTCATGAAGACCAGACCGAGCGGTCAAACATCCCGAACTGAGCTCCTACGGTTAATACACCTGTCCTTCTCATGGAGACGTAAAGAAACGCA

Function

symbol description
impg1a Predicted to enable heparin binding activity. Predicted to act upstream of or within visual perception. Predicted to be located in cell projection; extracellular region; and interphotoreceptor matrix.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000077187

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035182 True 940 mRNA 0.51 5 778608 791788

Neighbor

gene id symbol gene type direction distance location
XLOC_017800 prkg3 coding downstream 137097 616114 ~ 641511 (-)
XLOC_017799 NA coding downstream 244532 530511 ~ 534076 (-)
XLOC_017798 col10a1b coding downstream 290825 484256 ~ 487783 (-)
XLOC_017797 frk coding downstream 314822 441942 ~ 463786 (-)
XLOC_017796 ufl1 coding downstream 339962 418513 ~ 438646 (-)
XLOC_017802 impg1a coding upstream 11320 803108 ~ 805245 (-)
XLOC_017803 snx14 coding upstream 59795 851583 ~ 894374 (-)
XLOC_017804 cnr1 coding upstream 110624 902412 ~ 915234 (-)
XLOC_017805 rngtt coding upstream 152091 943879 ~ 1120056 (-)
XLOC_017806 gabrr1 coding upstream 340304 1132092 ~ 1151265 (-)
XLOC_017928 CU539064.1 misc upstream 9261617 10053405 ~ 10053701 (-)
XLOC_017795 NA non-coding downstream 366689 408561 ~ 411919 (-)
XLOC_017794 NA non-coding downstream 373242 403316 ~ 405366 (-)
XLOC_017787 NA non-coding downstream 661609 84692 ~ 116999 (-)
XLOC_017809 BX248418.2 non-coding upstream 406291 1198079 ~ 1198709 (-)
XLOC_017817 NA non-coding upstream 953437 1745225 ~ 1763478 (-)
XLOC_017819 NA non-coding upstream 1267150 2058938 ~ 2090789 (-)
XLOC_017821 NA non-coding upstream 1344107 2135895 ~ 2140246 (-)
XLOC_017822 NA non-coding upstream 1494884 2286672 ~ 2288716 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_00293739_00309628 IMPG1 coding CI01000325 null 293687 ~ 310238 (-)