XLOC_017806 (gabrr1)


Basic Information

Item Value
gene id XLOC_017806
gene name gabrr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1132092 ~ 1151265 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035191
TGTTGAGGGAAAGACAGCTCCACATCTGACCTTCACAGATGCAGCCGGCGTGTGTGTGGGAGATGCTCACAATGGGCCGTGTTTAGGTTTGGACAGCAGCACAGAGTGTGTACTTCAGGATAGCACCTGCGGCTGTATGTGGGCATCATGCACGCGGATGTCTGCTTTCTGCTCTGCGCGTGCTTTCTCTGCACTGGAGCTCTGCAGTCCTGTAGCAAGAGCAGGTCCAAGCGAGAAACAACCAGAGCAGAGCGAGACTTGCATAAACCTGGCAGcACTTTACTAATGCGAAGTCCAGATGTGACGAAAGCTCCCGTCACCAAATCCGAGCAGCTCCTGAAGCTGGACGATCACGACTTCACCATGAGACCAGGCTTTGGAGGGCCTGCGATACCTGTTGGTGTTGATGTTCAGCTGGAGAGTCTGGACACCATCTCTGAAGTTGATATGGACTTCACCATGACTCTGTATCTGAGACACTACTGGAAGGACGCGCGGCTGTCTTTTCCCAGCAACACCAACCAGAGCATGACCTTCGATGGCCGGCTGGTGAAGAAGATCTGGGTCCCGGACATATTTTTTGTCCACTCCAAGCGCTCCTTCATCCACGACACCACCACAGAGAACGTCATGCTGCGAGTGCATCCCGATGGGAAGGTGCTCTACAGCTTACGGGTCACGGTTACATCGATGTGCAACATGGACCTCAGTCACTTTCCCCTGGACACTCAGACCTGCTCGCTGGAGATCGAGAGCTACGCCTATACTGACGACGACCTGATGTTGTACTGGAAGAGAGGGAACAAATCTCTGCAGACGGACGACAAGATCTCTCTGTCTCAGTTCCTCATCCAGGAGTTCCACACCACCACAAAACTAGCCTTCTACAGCAGCACAGGTTGGTACAACCGTCTGTACATCAACTTCACTCTGCGCCGCCATATTTTCTTCTTCCTGCTTCAGACGTATTTTCCCGCCACTCTGATGGTCATGCTGTCATGGGTGTCCTTCTGGATCGACCGGCGAGCTGTTCCTGCCAGAGTTCCTCTGGGCATCACGACGGTGCTCACCATGTCCACCATCATCACCGGAGTGAACGCCTCCATGCCCAGAGTCTCCTACATCAAAGCTGTGGACATTTACCTGTGGGTCAGCTTCGTCTTTGTCTTCTTATCTGTCATCGAGTACGCCGCGGTGAACTACCTGTCCACTCTGCAGGAGCGCAAAGAGAGGTCACAAAACAGCCGGCAGTTGCCGTGTACCTGCGGAATGACCCATCCCGGTCAGATGATGATGAGCAGCAGCTACAGTGAGATGGACATGATGACCACGGGAAACTACGGCATGTCGGAGCTGAGCGACACCAAGCAGGAGCAGTTCCTGGTTCATCTGGTTATGGATAACGAACAGGGCGCTCAAAGGCCCGCCGTGACCACCAGCAGCACGTTAAATATAGACACTCACGCTATAGACAAGTACTCGCGGGTCATCTTCCCTGGAGCGTACACACTCTTCAACATCATATACTGGTCCATCTACTCACAGTGA
>TCONS_00035192
CATGACCTTCGATGGCCGGCTGGTGAAGAAGATCTGGGTCCCGGACATATTTTTTGTCCACTCCAAGCGCTCCTTCATCCACGACACCACCACAGAGAACGTCATGCTGCGAGTGCATCCCGATGGGAAGGTGCTCTACAGCTTACGGGTCACGGTTACATCGATGTGCAACATGGACCTCAGTCACTTTCCCCTGGACACTCAGACCTGCTCGCTGGAGATCGAGAGCTACGCCTATACTGACGACGACCTGATGTTGTACTGGAAGAGAGGGAACAAATCTCTGCAGACGGACGACAAGATCTCTCTGTCTCAGTTCCTCATCCAGGAGTTCCACACCACCACAAAACTAGCCTTCTACAGCAGCACAGACGTATTTTCCCGCCACTCTGATGGTCATGCTGTCATGGGTGTCCTTCTGGATCGACCGGCGAGCTGTTCCTGCCAGAGTTCCTCTGGGCATCACGACGGTGCTCACCATGTCCACCATCATCACCGGAGTGAACGCCTCCATGCCCAGAGTCTCCTACATCAAAGCTGTGGACATTTACCTGTGGGTCAGCTTCGTCTTTGTCTTC

Function

symbol description
gabrr1 Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Acts upstream of or within with a positive effect on negative regulation of G0 to G1 transition. Acts upstream of or within with a negative effect on regeneration. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in diencephalon and eye. Orthologous to human GABRR1 (gamma-aminobutyric acid type A receptor subunit rho1).

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1902711 GABA-A receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004890 GABA-A receptor activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-212 Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Acts upstream of or within with a positive effect on negative regulation of G0 to G1 transition. Acts upstream of or within with a negative effect on regeneration. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in diencephalon and eye. Orthologous to human GABRR1 (gamma-aminobutyric acid type A receptor subunit rho1).

Ensembl:

ensembl_id ENSDARG00000043902

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035191 False 1548 mRNA 0.53 10 1132092 1151265
TCONS_00035192 True 578 mRNA 0.54 5 1132579 1141722

Neighbor

gene id symbol gene type direction distance location
XLOC_017805 rngtt coding downstream 12036 943879 ~ 1120056 (-)
XLOC_017804 cnr1 coding downstream 216858 902412 ~ 915234 (-)
XLOC_017803 snx14 coding downstream 237718 851583 ~ 894374 (-)
XLOC_017802 impg1a coding downstream 326847 803108 ~ 805245 (-)
XLOC_017801 impg1a coding downstream 340304 778608 ~ 791788 (-)
XLOC_017807 gabrr2b coding upstream 7128 1158393 ~ 1176631 (-)
XLOC_017808 ube2j1 coding upstream 26486 1177751 ~ 1191910 (-)
XLOC_017809 BX248418.2 coding upstream 46814 1198079 ~ 1198709 (-)
XLOC_017810 ankrd6b coding upstream 51973 1203238 ~ 1239603 (-)
XLOC_017811 lats1 coding upstream 89196 1240461 ~ 1268869 (-)
XLOC_017928 CU539064.1 misc upstream 8902140 10053405 ~ 10053701 (-)
XLOC_017799 NA non-coding downstream 598016 530511 ~ 534076 (-)
XLOC_017795 NA non-coding downstream 720173 408561 ~ 411919 (-)
XLOC_017794 NA non-coding downstream 726726 403316 ~ 405366 (-)
XLOC_017787 NA non-coding downstream 1015093 84692 ~ 116999 (-)
XLOC_017817 NA non-coding upstream 593960 1745225 ~ 1763478 (-)
XLOC_017819 NA non-coding upstream 907673 2058938 ~ 2090789 (-)
XLOC_017821 NA non-coding upstream 984630 2135895 ~ 2140246 (-)
XLOC_017822 NA non-coding upstream 1135407 2286672 ~ 2288716 (-)

Expression


Co-expression Network