RNA id: TCONS_00035192


Basic Information

Item Value
RNA id TCONS_00035192
length 578
RNA type mRNA
GC content 0.54
exon number 5
gene id XLOC_017806
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1132092 ~ 1151265 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATGACCTTCGATGGCCGGCTGGTGAAGAAGATCTGGGTCCCGGACATATTTTTTGTCCACTCCAAGCGCTCCTTCATCCACGACACCACCACAGAGAACGTCATGCTGCGAGTGCATCCCGATGGGAAGGTGCTCTACAGCTTACGGGTCACGGTTACATCGATGTGCAACATGGACCTCAGTCACTTTCCCCTGGACACTCAGACCTGCTCGCTGGAGATCGAGAGCTACGCCTATACTGACGACGACCTGATGTTGTACTGGAAGAGAGGGAACAAATCTCTGCAGACGGACGACAAGATCTCTCTGTCTCAGTTCCTCATCCAGGAGTTCCACACCACCACAAAACTAGCCTTCTACAGCAGCACAGACGTATTTTCCCGCCACTCTGATGGTCATGCTGTCATGGGTGTCCTTCTGGATCGACCGGCGAGCTGTTCCTGCCAGAGTTCCTCTGGGCATCACGACGGTGCTCACCATGTCCACCATCATCACCGGAGTGAACGCCTCCATGCCCAGAGTCTCCTACATCAAAGCTGTGGACATTTACCTGTGGGTCAGCTTCGTCTTTGTCTTC

Function

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1902711 GABA-A receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004890 GABA-A receptor activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-212 Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Acts upstream of or within with a positive effect on negative regulation of G0 to G1 transition. Acts upstream of or within with a negative effect on regeneration. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in diencephalon and eye. Orthologous to human GABRR1 (gamma-aminobutyric acid type A receptor subunit rho1).

Ensembl:

ensembl_id ENSDART00000152675

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035187 lncRNA downstream 247219 882451 ~ 885360 (-) True XLOC_017803
TCONS_00036780 lncRNA downstream 598503 530511 ~ 534076 (-) False XLOC_017799
TCONS_00036781 lncRNA downstream 598515 531290 ~ 534064 (-) False XLOC_017799
TCONS_00036782 lncRNA downstream 598537 531502 ~ 534042 (-) True XLOC_017799
TCONS_00035176 lncRNA downstream 700283 430001 ~ 432296 (-) True XLOC_017796
TCONS_00035196 lncRNA upstream 56357 1198079 ~ 1198709 (-) True XLOC_017809
TCONS_00035212 lncRNA upstream 312428 1454150 ~ 1463535 (-) True XLOC_017815
TCONS_00036440 lncRNA upstream 493910 1635632 ~ 1725104 (-) True XLOC_017816
TCONS_00036441 lncRNA upstream 603503 1745225 ~ 1763478 (-) True XLOC_017817
TCONS_00036783 lncRNA upstream 917216 2058938 ~ 2065432 (-) False XLOC_017819
TCONS_00035190 mRNA downstream 12523 943879 ~ 1120056 (-) True XLOC_017805
TCONS_00035189 mRNA downstream 217345 902412 ~ 915234 (-) True XLOC_017804
TCONS_00035188 mRNA downstream 222626 902412 ~ 909953 (-) False XLOC_017804
TCONS_00035184 mRNA downstream 238205 851583 ~ 894374 (-) False XLOC_017803
TCONS_00035193 mRNA upstream 16671 1158393 ~ 1174266 (-) False XLOC_017807
TCONS_00035194 mRNA upstream 17013 1158735 ~ 1176631 (-) True XLOC_017807
TCONS_00035195 mRNA upstream 36029 1177751 ~ 1191910 (-) True XLOC_017808
TCONS_00035197 mRNA upstream 61516 1203238 ~ 1239596 (-) False XLOC_017810
TCONS_00035198 mRNA upstream 61883 1203605 ~ 1239603 (-) False XLOC_017810
TCONS_00035199 other upstream 88066 1229788 ~ 1239603 (-) True XLOC_017810
TCONS_00035230 other upstream 1547826 2689548 ~ 2708120 (-) False XLOC_017830
TCONS_00035232 other upstream 1574227 2715949 ~ 2725519 (-) False XLOC_017831
TCONS_00035252 other upstream 2180882 3322604 ~ 3322820 (-) True XLOC_017842
TCONS_00035253 other upstream 2181844 3323566 ~ 3323782 (-) True XLOC_017843

Expression Profile

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