RNA id: TCONS_00036783


Basic Information

Item Value
RNA id TCONS_00036783
length 6495
lncRNA type sense_over
GC content 0.40
exon number 1
gene id XLOC_017819
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 2058938 ~ 2090789 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tatgtatatatgtcccGAATTTTGCTTGACAATCTTAAGCCAGTTGTAATGGATTGctttggttcaatttggaatttccccaaccaGCGCAGAGCCCAGGGGACTAGAGTGAGTGCTCTGACTTATCCCCCCTTGGTCCATACATAGAACTattaatcaaaacatttcatAAGCTTTGGACTATAGTGAAATATAAAAACAGACGAAAGTTAATGTTATAAACAGTGGAAAAGGACTTGTTTTTAGTGTTGTTGCAGTTTATTTGAACAATGATGTCCTCTTaatatggaatatatatatatttttttgcttgtataTGCTGTCAATTATAGTTCTtcagaaaattatattttatattagaatGATTAGAACATCTGAATCGGCATAAATCGGTATCGGCAGGTCAAGCATACCAAAAGAATCGGTATTAACTAAGAAAATTGCAATCGGTGCATCTCTAGTACTTTTCTTCTGTCCCCGCTCCACCTTCCAGTATCAGATTTTCAGTGTGAAATGCGAAATATGTTCACCGCTTTCAGCTTATAGCCGTTTAAATCAGCAGCAGTCCAGTGGGACCCTATTCATAGTCTGCATCCGGTCTCAAATCCCTTCTGCTGAAGCATTTATTATTAGACCAGATCACTAGAGCAGCTTCAATCTTACAAAAACGCAGCAGATTTATACATATTTTGGATCTTCTTAATCAAGAGTTTCGTAAATTTTACTAAAGAGCCAGAAGAACAGATCAGCAACATCAGCATCGCACTCAGACTAGCCTGTCCCAGAGCTCAGGGCTCGCCCCTCATAACATCACACACCCTGTGTGCTCATTGATTAGGGATAGAGGCCTTCCTATCATCCATTTCACCTTTTCCAAAAATGTGTCCATTATTCCACCAATTAGGCTCCACAGGTGGAGCTCGAGGAGAAGCCAAGTGTGGACGTGGCCACATCCGTCACCTCCGAGTCAGCCTCTAAGGTCTGCAAACCTTCCAAGCTTGCATCTGTAATCATGTTTAATTCTGAGGTTTAGCAGGATGTGTTTTGATGTAATCTCAATCTTTTATCTCTGACGGCATGTGCAGACGGATAAAGGTGGCGCTGGTGCTCCTCAAACAAAGGTCTTTTTGAgattgagttttgtttttttgcatcatgGTGGTTTGATGACGTGAACTCTTTGCTTCGTCTGCTGTGGTGTTGGttaagtgtttttatttctgtgctTGTTCTCATGTGcgtgttttattatttaagttgCAAATGCGGCGTTAATCACATGAGCTCTCTTGAGTAATCAACAGGAGATTAACGTGCTGATTGTTGACTTGTGATCAAATGCTGATTTGCCTGTTGGTTGGTTACTTCAGAGAACCGTGATGCTGATCAGGAAATGTCATATATGCACCAAATTGGATGAGGTTGCATCAGAAAGCCTGAGAGGACATCGGAAGTGTTTTCAATTGGGCGTTTCACTCAAAGTGGCATTCTGACTCCATCATTTGAAAAGCAAACCATGTTAAGTGATGCAAAGACACATTAGCGGTGTTTTCACTAGTGCTCTCAGGCTTTCAGAGTCCTCTGTAATCATTTTCTCCTCATCAGATTTGAGACTCCACTTCATTATCatctgtctttttttgtttttcttctcgTTTTGTTCAAATGTGTTCTCATTTTTTTTGATCCACAGAGCAAGTTGAGAGTGCAAGGGGAAAATATATATGTCAGACATAGCAATTTAATGTTGGAGGTTTGTATGTTGTTCTGTATGCAATCAAAACTATTGAGAAACACAATGAAGTTCAATGAAAGAAAGAGCAAAAGCTTAATTGATGGAGGACATTTGTCCCCTCTCTGGCTACTGTCCTGGGCTGCCTCTCACTCTTCCTCTTTCAGGCTTTGTGTGCatgctttagtgtgtgtgtgtagtgtgtgtgtacacCCATGCATGGGTTGCATGTTAACTGGGTGATCTGAATGTACGTGATTTTTAACGTTTGTGTTTGTAAGATTTGGGAATTGCTCTGATAACAACACTAATAGCATTTCCCTAACCAGACAGGTGACTTTCTGCTTTGGTTGCGgtgattgtttacattttattgtataaCTTAAAGAAGTTACTCATCCTGGGGGTGAACCTGTCGGTGCTGAAGACACACACTCATAACCTCTGAGACAAGCAGACCACTCCAGAACACTCCACAAAGTGCTTTACTTATTTTTTGTCCTGTTTATAATCCAATTATCTAGCGATTGGTCAAGGAAGAAAATGTTGTTTAAAGAAACAAGTCattaaaattagaaaataaaaatcatttggtttgaaatatgattattttacttTGGCTATTTTGTTCCACAGAAGTAGCAAGTCAAACCTGATTTTGACGTATTattactgaaaaacaaaacaacaatcttatttatttgtttaggatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagattgatagatagattgattgattgattgattgattgattttgagGAGTTTTTTATAAACCTGATATTGCTAgtattacactacctgacaaaagtcttgttgcggatcccagttgtaaaagcaacacatAATATCTtaaattctagttgatcatttggaagcagaaggtcgattttcgcatcaatcatctgctgatctgcatcccaatcaacacaaatactgcagaagacatacTGGAAtccacatggagccaagattctcacagaaatcagtcaagtttggtgaaggtaaaatcatggtttggggttgcattcagtatgggggcgtgcgagagatctgcagagtggatgatcaacatcaacagcctgaaggatcaagacatttgtgctgctcattacattacaaaccacaggagagggacaattctccagcaggatagcgctccttctcatacttcagcatccacatcaaagctcctgaaagcagagaaggtgaagctgctccaggattggccagcccagtcaccagagatgaacattattgagcatgtctggggtaagatgaaggaagaggtgttgaagatgaacagaaagagtcttgatgagctctgggagtcctgctgaacgctttcttcttcattccagatgactttattaatcagtgatttgagtcagtgcagagatgtatggatgcagtcctccaagctcatgatggagtcagacacaatattcattctgtctccactgcagcaggactttatattctatactggacattatttctgttcagtgatgagactttagtccaagcagagtcagaccttactgtcctaatgaaatcattaataatcaaggcatgatcatgttttattgtgctcaaatatatgtcatctagaggcctttgcctttcatataagccacttctgataccaaatgatcaactagttattatttgctgttcccaAAACATGGATGGGCGaaaagactttagtcaggtagacTAAATAAAAGAGTATTTTGTCATTTGAATTGATTTTGCTCTAACATTGTCTAATCATTTTGTGTTTCGATCAAATAATCCAAATCGAGCTACTGATGCTCATGCAAATAGATTGATGttcaataaaagtaaaacaacgGCATCACAGTGTCAGCATACTGATGACTCTAAAACAAGGGTGTCCGATCCTGTTCCTacagatctaccttcctgcagagtttagcagCGACTCTGAACAACCTCTAATAAACAACTAAACCATTTAAGCAGGATCTGAAGGAACACTTGGTTATAaatacaggtgtgtttgattaaggttgcagctgaactctgcaggaaggtagatctccaggaccaggattgtgCACCACTGCTCTAAAAACACTAGTGGGTGTTTCCACATTTTGACACACTGGTCGCACGCTCAGACTGGCATTTAGTGGGCGTCTTTGGCACAGGCACAGTGTTTTACTGCACCGCTCCAGTCCTCAGTGTGTACACAAGTCCTGCCTCACTGCTGACCTCTGACCTGACCCTCGTAATCCCATCATTACACCAGGATCAAACACCTTTGGGATTACCAGCCTCCTTCAAACCACTCAAAGAAAGTTTGAGGATGTTTCCTGTTGACTGGACCGCTTATTTGAGTGAGGGATAGATGTACAGAAAATTGAGCTGCTCTTAGGTGTGTCAGATGAATTATAAACACCTGCATAAGGTATTGCTTTATGTACAGCATGACTTTTAGTGGTCTTTGCTCAGAGGTTAAATAAGCGCCTGAGCATCGCTATGTTGTTTTTGCAGACATTCAGATTCTGTGCAAACAATAACTAATGAAACAAACTACAAATAAGCTCCTTTTAAGCCAGAGAGCTTTTCAAAATGATGTTACACCCCTTCAGGTTGAAgaattaactacactgtaaaacccaataagtggaggtaacttaaaccgtttgaggaaaccgattgcaacaaaccatttaagttctaaagctaatcctaatgagtactgtgaacttaatccgttTGAGTAATCGAAGCTATTTGAGCACAGTTAactccaataaatgaagagaactcaaaccaactgagcactgtaaagccaaataagttaaggcaactcaaaccgtttgaggaaactgatttctGCAAGTTAAAAAACGAATCTatgtgagtactgtgaacttactccatttaagatgAAGTACTCAtgaccttcaacactgagttcaaaactctttacaAATGAGTTGAATTAACTTttagtacattttgagttaactacactcatttcattatgCAAAgtcgactgttgggttttacagtgtaataaacataaatcttgatttttttttccctttagttTTCAACAATTTCGCCCAAAGAACAAATTGGTGTGATGCACCACAGCAGCGTTTCTCAAAGGAcgaccagctctgcacatttctgtctccttaaccaaacacaccagattcagatcatcagctcataatcagagactgaaagacctgaaataggtgtgacagacaaaggagacatccaagacacatgcagtgctggtgctcTTCCAGccacgtggttgagaaacactgtacttCAGAGCACACTTCTTTGGTTACAAATAGCTCGAATTGAATGGTGGTGAGGTCGTTTTGAATGAAGTCTGGCATATCCAGAGGTTTGTTTGAGTAATTCCAAACAGTTTACCAAAGTCTGTGCTGATGAACCGTCTCAAACCACCAAAGCAAACTCTGAATAACTCTGTTTCAGTCGAATTTTGTGtcacattaaacattaaaatgagtttttctgttttaattagGCATGggccttgaaaacggttatcatcacACGCCTAGTTTCACTAAAAGCTGAAGTCTGTATCTCTGTCCCTCACACACTTATTTTCATTTACGTCAAATTAATAGTGGCGTCCAACATTATTACAGCGCAATAAAAGATCTTAAGATTGTCATGTTCACCAAACTAAACGAGAATATTTGCTAAATATTATTTGAAGATTATTCTGGAGGCTGCGGTCAGTCAGTCAGGTGTGCAGTGAGGCTGGACTCTTTACCGTGGTTCAGGTCTCTCCATGACTAATGTGCTGGTTGTTGGTTGTCCCTCTGTCCTCCCCCCGCCTGCCTGCCTGTCCCCTGTGCTGCTGCGGGCCCTTCAGGACTTGGATAAGACCCAGGAGGATGTGTTGAAACATCAGGCTAGCATTAGCGAGCTAAAGCGCAGTTTTATGGAGGCTGCGCCCGAGCCCAGGCCCAGTCAGTGGGACAAGCGCCTGACGGGCAGCCCTGCCACCACCCTGCGCCTGCAGGCTCCAGGGGTATGTGTGCTTCTGCTCGGGATACGGACCCTCTGCATGCCTCTTCGTCCTGCCCTCCTCGCTCTCAGATCAGGGGTCTCTGTGTGTTTCCGCTGCATGCtgctaggcctgtcacgataGTCAGTAGCAGTGCTGCACCATATTGGAAAAACACCAGCCCAAATGAGCTCAAGTCTGCAGCCCACCAACAGAATAATTCATGATTCACGAATAacgttaaagccattttacaaggACATCTTTGCTTATTTATATGCTGTTTTGTGATCATTATATAAACACAGACATAAATTCATCTTAAAATGACGACATTGCTTATCGCAGTCATTTTAATGATGATATATCACACAGCAAAATTGACTTATCGTGACGGGCCTTCTGGGACAGTTGGGAAAATGTTAAGTGAAATTAGTGCTCATGTTATTGAATTCACTTTAAAGCCTTGTTAACGGCGACACCTGTGGCTGTTCAGTGAACTGCAGCCGGAAACTTCTTTCTCATGCAAATGCACTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036441 lncRNA downstream 295460 1745225 ~ 1763478 (-) True XLOC_017817
TCONS_00036440 lncRNA downstream 333834 1635632 ~ 1725104 (-) True XLOC_017816
TCONS_00035212 lncRNA downstream 595403 1454150 ~ 1463535 (-) True XLOC_017815
TCONS_00035196 lncRNA downstream 860229 1198079 ~ 1198709 (-) True XLOC_017809
TCONS_00035187 lncRNA downstream 1173578 882451 ~ 885360 (-) True XLOC_017803
TCONS_00036784 lncRNA upstream 70463 2135895 ~ 2140246 (-) True XLOC_017821
TCONS_00036785 lncRNA upstream 221240 2286672 ~ 2288716 (-) True XLOC_017822
TCONS_00036786 lncRNA upstream 351023 2416455 ~ 2425360 (-) True XLOC_017824
TCONS_00036787 lncRNA upstream 412784 2478216 ~ 2481821 (-) True XLOC_017825
TCONS_00035221 lncRNA upstream 432089 2497521 ~ 2498941 (-) True XLOC_017826
TCONS_00035214 mRNA downstream 211505 1846081 ~ 1847433 (-) True XLOC_017818
TCONS_00035213 mRNA downstream 423016 1607457 ~ 1635922 (-) False XLOC_017816
TCONS_00035208 mRNA downstream 498089 1441548 ~ 1560849 (-) False XLOC_017815
TCONS_00035216 mRNA upstream 52924 2118356 ~ 2134620 (-) True XLOC_017820
TCONS_00035217 mRNA upstream 221866 2287298 ~ 2290529 (-) False XLOC_017823
TCONS_00035218 mRNA upstream 224993 2290425 ~ 2361226 (-) False XLOC_017823
TCONS_00035219 mRNA upstream 227047 2292479 ~ 2355357 (-) False XLOC_017823
TCONS_00035220 mRNA upstream 227152 2292584 ~ 2298970 (-) True XLOC_017823
TCONS_00035199 other downstream 819335 1229788 ~ 1239603 (-) True XLOC_017810
TCONS_00035230 other upstream 624116 2689548 ~ 2708120 (-) False XLOC_017830
TCONS_00035232 other upstream 650517 2715949 ~ 2725519 (-) False XLOC_017831
TCONS_00035252 other upstream 1257172 3322604 ~ 3322820 (-) True XLOC_017842
TCONS_00035253 other upstream 1258134 3323566 ~ 3323782 (-) True XLOC_017843
TCONS_00035254 other upstream 1259051 3324483 ~ 3324698 (-) True XLOC_017844

Expression Profile

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