RNA id: TCONS_00035214


Basic Information

Item Value
RNA id TCONS_00035214
length 1353
RNA type mRNA
GC content 0.45
exon number 1
gene id XLOC_017818
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1846081 ~ 1847433 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGAAACTCACTGTATTTCACCGCAATGACacttctgtacacacacacacacacacaacacaacacaacacaacacaacacaacacaacacaacacaacacaacacaacacaacacacacatgcacacgcagaaacatgcacacacacatgcatgcacaaacaccaaaaacatgcacacatacaaacatgcaagCACACAGTCACTCatgcatacacatatacacaaacaaacacacacacttgcgcgtacacacacacacacaaccaaatGCAGACACGTACACACACAACGCACAGACATCCACACAgctaacacatgcacacacacacacatgtacacacaaacactccctcagacacacaaacacacacacacacacacacactaacaaacagaCAAGTGCACACTCACAACtaacacacattcacagacacaacatgtgcacaaacacacaaacacacatgcacgcacacacacagtacaaCATACATACACAACATACATACACGTGCACATGCACAAAGAAatgtgcagacacacacacacacacacacacacacacacaacacacaacacacagacatgcacacatggacatacacactcagtcaaacacacacatgcacagaggCATGCAAGCAAACAGGcacacactaacacaaacacacacacacacacacacacacacacagcaatgcATTgacacaacacatacacacacaaacatgcaagcatacagacacacacacaaacaaacaaacaaacgcatacacacacacgcacacacaacacaAATACATGGACACACATCAAATAAAGAcagacatgaacacacacacacacacacaactaccaCATGCAAATAcaacactcacacatgcacacaaacatgcaagcacacacacacacacgcgcgcgcacatacacactcaatctgacacacacatgcacaaaaacatgcaGGCACAggcacacacttacacaaacacacaagcatgcacaaattgcaaacacgcacacacacacacacacacacacacagatgcatggAAACACAATATGCAtactcacacacatgcatgaacaactaacacacacacacgcacacaaacatgcaagcatgcacacacacacacacaccaacacacaatcacacacaaacaacacacagagacccacacacaaaacacaaatgcATGGACATACAttgctatacacacacacacacacacacacacacacacacccacacacacacacacacacagagagacatatGCAAGTGGGGAGGTCGAGCAGCAGCACACAGAGGCTGAATAAAGAGTCTTTTCTGTGCAGGAATTTGAAGAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000164211

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036441 lncRNA downstream 82603 1745225 ~ 1763478 (-) True XLOC_017817
TCONS_00036440 lncRNA downstream 120977 1635632 ~ 1725104 (-) True XLOC_017816
TCONS_00035212 lncRNA downstream 382546 1454150 ~ 1463535 (-) True XLOC_017815
TCONS_00035196 lncRNA downstream 647372 1198079 ~ 1198709 (-) True XLOC_017809
TCONS_00035187 lncRNA downstream 960721 882451 ~ 885360 (-) True XLOC_017803
TCONS_00036783 lncRNA upstream 211505 2058938 ~ 2065432 (-) False XLOC_017819
TCONS_00036784 lncRNA upstream 288462 2135895 ~ 2140246 (-) True XLOC_017821
TCONS_00036785 lncRNA upstream 439239 2286672 ~ 2288716 (-) True XLOC_017822
TCONS_00036786 lncRNA upstream 569022 2416455 ~ 2425360 (-) True XLOC_017824
TCONS_00036787 lncRNA upstream 630783 2478216 ~ 2481821 (-) True XLOC_017825
TCONS_00035213 mRNA downstream 210159 1607457 ~ 1635922 (-) False XLOC_017816
TCONS_00035208 mRNA downstream 285232 1441548 ~ 1560849 (-) False XLOC_017815
TCONS_00035209 mRNA downstream 285232 1442530 ~ 1560849 (-) False XLOC_017815
TCONS_00035210 mRNA downstream 285357 1442634 ~ 1560724 (-) False XLOC_017815
TCONS_00035211 mRNA downstream 391950 1443999 ~ 1454131 (-) False XLOC_017815
TCONS_00035215 mRNA upstream 216967 2064400 ~ 2090789 (-) True XLOC_017819
TCONS_00035216 mRNA upstream 270923 2118356 ~ 2134620 (-) True XLOC_017820
TCONS_00035217 mRNA upstream 439865 2287298 ~ 2290529 (-) False XLOC_017823
TCONS_00035218 mRNA upstream 442992 2290425 ~ 2361226 (-) False XLOC_017823
TCONS_00035219 mRNA upstream 445046 2292479 ~ 2355357 (-) False XLOC_017823
TCONS_00035199 other downstream 606478 1229788 ~ 1239603 (-) True XLOC_017810
TCONS_00035230 other upstream 842115 2689548 ~ 2708120 (-) False XLOC_017830
TCONS_00035232 other upstream 868516 2715949 ~ 2725519 (-) False XLOC_017831
TCONS_00035252 other upstream 1475171 3322604 ~ 3322820 (-) True XLOC_017842
TCONS_00035253 other upstream 1476133 3323566 ~ 3323782 (-) True XLOC_017843
TCONS_00035254 other upstream 1477050 3324483 ~ 3324698 (-) True XLOC_017844