RNA id: TCONS_00035209


Basic Information

Item Value
RNA id TCONS_00035209
length 3595
RNA type mRNA
GC content 0.57
exon number 25
gene id XLOC_017815
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1441548 ~ 1560849 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCCGCCGAGACCCATCGCTCCACCTCAGCTGCTGGGCGTCGGGCCCACATACCTGCTGATCCAGCTCAATGCTAACTCCATATTCGGGGACGGGCCCATCATCCTGAAGGAGGTGGAGTACCGCATGACGTCCGGCAGCTGGACAGAAACCCACGCCGTCAACTCGCCCAACTACAAGCTCTGGCACCTGGACCCCGACACCGAATATGAGATCCGCGTGCTGCTGACTCGTCCCGGAGAGGGGGGCACCGGACAGCCCGGGCCCGCGCTCATCACCAGAACCAAGTGTGCAGAGCCCATGCGGACCCCTAAGAGCCTGAAGATTGCGGAGACGCAGGCGCGCTTCATCGCTGTGGACTGGGAGTCTCTGGGCTACAACATCACCCGCTGCCACACCTTCAACGTCACCATCTGCTACCACTACCACAAAACCCCCAACCACAGCAAGGCCGACTGCCTGGAGATGGACCCCAAGGCCCCGCGACACGTGGTGGGAAACCTGCCGCCTAACACCAACGTCAGCCTGAAGATGATCCTCACCAACCCAGAGGGGCGCAAGGAGAGCGATGAGACCCTCATCCAGACCCAGGAGGACGTTCCCGGGCCAGTTCCCAAGGAGTTTGTGCGATCAACGCCTTCTGAGGATAAGATCTCTCTGCAGTGGAAAGAGCCTCTGGAGCCCAACGGCATCATAACACAGTATGAGATCAGCTACAGCAGTGTGCACTCCTTCGACCCGTCCGTCCCGCTGCTGCGTCCCCCACTGCTGGTGTCTCTGCCCTGGAACACGTCCCGCTACAACTTCACTCTGCTCCACCCCGGCACCACATACCAGTTTCTGATCCGCGCCAGCACTAGCAAGGGCTTCGGCCCCCCCACCACACTCAACGTCACCACCAACATATCAGcgCCAACGCTGGAGGAGTATGACGGCTCAGAGGCATCCCTGAACGAGACGGCCACCACCATCACTGTCCTGCTGAAGCCTGCGCAGGCCAAAGGAGCAcccatcagCGCCTATCAGATTGTGGTGAAGGAGATCAACCCTCATCGCGGGCGCCGTGAGGCCGGTGGAGGCGAGTGTTACCGGGAGCCGGTGTCCTATCAGAGCGCCGTCAGCTCTGGCCTGCCCTATTACTTTGCAGCAGAGATTCCTCCCAGAAATCTGCAGGAGCCGCTGCCGTTTACTGTGGGAGACAACAAGACCTACCACGGCTACTGGAACGCTCCTCTCGCACCCCGCAAAGACTACAACATCTACTTCCAGGCGGTCAGCCGAGTGGAGAAGGAGAGTAAAACGCAGTGTCTGAAACTGGCCTTTAAAGgAGCCACGGAGGAGCCGGAGGTGATTCCAGACCCGGCCAAACAGACGGATCAGGTGGTGAAGATCGCCGGCATCAGCGCTGCTGTGCTGGTCTTCATCCTGCTGGTGCTCGTAGCCATCCTGCTGCTCAAGAAACGGAGGAGCTACTATTCGTACTCATATTACCTGAAACTGGCCAAGAAGCGCAAGGACGCCATCGGGAACACCCGTCAGGAGATGACCCACATGGTGAATTCCATGGACCGCAGTTACGCCGACCAGAGCACGCTGCACGCTGAGGAGCCCATGACCGTCACATTCATGGACTCGCACAACTTCAGCAACCGCTATGAGAACCACACTGCGGCAGCGGCGGCAGCGGAGAACAGCAGACTGCTGGATATCCCGCGATACCACTGCGAGGGTACCGAGTCCCCTTATCAGACGGGACAGCTCCATCCGGCCATACGGGTGGCGGATTTGCTGCAGCACATCAACCTGATGAAGACCTCCGACAGCTACGGCTTCAAGGAGGAGTATGAGAGTTTCTTTGAGGGTCAGTCTGCTTCCTGGGACGCGGCAAAGAAAGAGCAAAATCGAACGAAGAATCGATATGGGAACATCATTGCATATGATCATTCTCGAGTGATCCTGCAGCCCATGGAAGACGACCCGTCGTCCGACTACATAAATGCCAACTACATTGATGGATACCAGCGGCCCAGTCATTACATCGCAACTCAAGGTCCTGTCCACGAGACGGTGTATGACTTCTGGAGGATGATCTGGCAGGAGCAGTCGGCCTGTATCGTCATGGTAACCAACCTAGTGGAGGTGGGCCGGGTCAAATGCTATAAGTACTGGCCTGATGATGCTGAAGTTTACGGAGATTTCAAGGTCACATTTGTGGAGGTCGAGCCGCTCGCTGAATATGTTGTCAGGACGTTCACTCTGGAGAGGAGGGGTTTCAATGAGGTGCGAGAGGTGAAGCAGTTTCATTTCACCGGCTGGCCTGATCATGGAGTGCCGTATCACGCCACCGGACTGCTGTCCTTCATCAGACGAGTGAAGATGTCCAACCCGCCCACCGCTGGGCCTATAGTCGTCcactgcagTGCCGGAGCCGGACGGACCGGATGTTACATCGTGATCGACATCATGCTGGACATGGCTGAGAGAGAAGGAGTGGTGGACATCTATAACTGCGTCAAAGCTCTGCGCTCCAGACGAATCAACATGGTACAGACCGAGGAGCAGTATATTTTCATCCACGATGCCATCCTGGAGGCGTGTTTGTGTGGCGAGACGGCCATCCCTGTGTGTGAGTTTAAAGCTGCGTATTACGACATGATCCGCATCGACTCGCAGAGCAACTCCTCGCACCTCAAAGACGAGTTCCAGACGCTGAACTCAGTGACTCCTCAGCCTCAGCCTGAAGACTGCAGCATTGCGCTGCTTCCCCGAAATCACGACAAGAACCGCTTCATGGACAACCTGCCGCCCGACCGTTGCCTGCCCTTCCTCATCACCATCGACGGAGAAAGCAGCAACTACATCAACGCCGCGCTCATGGATAGCTACAGGCAGCCGGCCGCCTTCATCGTGACCCAGCACCCGTTACCCAACACCGTCAAGGACTTCTGGAGGCTGGTGTACGATTACGGATGCACCTCTATCGTCATGCTGAACGAGATCGATTTGGCCCAGGGGTGTCCACAATACTGGCCCGAGGAAGGAATGCTCCGATACGGCCCTGTCCAAGTGGACTGCATATCCTGCTCCATGGACTGTGACGTCATCAGTCGTCTTTTCAGGATATGCAACCTGACCAGGccTCAGGAAGGATACCTGATGGTCCGGCAGTTCCAGTATTTGGGGTGGGCGGGGCATAGAGAGGTTCCCGCCTCCAAGCGCTCCTTCCTCAAACTGATCCTGCAGGTGGACAAATGGCAGGAGGAGTGTGAAGAAGGAGACGGGCGCACCATCATACACTGCCTGAACGGAGGCGGCCGCAGCGGGATGTTCTGTGCCATCAGTATTGTGTGTGAGATGATAAAGCGTCAGAATGTGGTGGATGTTTTTCATGCGGTGAAGAGTCTGCGCAACAGCAAACCCAACATGGTGGACAGTCCGGAGCAGTACCGCTTCTGCTACGATCTGGCGCTGGAGTTCATCGAGACCTCATAATGGAGTCTGGGCTGATCTGGTGTCAGTCGGAGAAACACACAGCGTGGAGATCTCTGCGTCCGCCCTGACCGTCACCCGCTCGACTTTTATCAGCTTTCtttgat

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-030131-9834 Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; digestive system; immature eye; musculature system; and nervous system. Orthologous to human PTPRK (protein tyrosine phosphatase receptor type K).

Ensembl:

ensembl_id ENSDART00000133369

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035196 lncRNA downstream 243821 1198079 ~ 1198709 (-) True XLOC_017809
TCONS_00035187 lncRNA downstream 557170 882451 ~ 885360 (-) True XLOC_017803
TCONS_00036780 lncRNA downstream 908454 530511 ~ 534076 (-) False XLOC_017799
TCONS_00036440 lncRNA upstream 74783 1635632 ~ 1725104 (-) True XLOC_017816
TCONS_00036441 lncRNA upstream 184376 1745225 ~ 1763478 (-) True XLOC_017817
TCONS_00036783 lncRNA upstream 498089 2058938 ~ 2065432 (-) False XLOC_017819
TCONS_00036784 lncRNA upstream 575046 2135895 ~ 2140246 (-) True XLOC_017821
TCONS_00036785 lncRNA upstream 725823 2286672 ~ 2288716 (-) True XLOC_017822
TCONS_00035207 mRNA downstream 3274 1423192 ~ 1439256 (-) True XLOC_017814
TCONS_00035205 mRNA downstream 58614 1354695 ~ 1383916 (-) False XLOC_017813
TCONS_00035206 mRNA downstream 64016 1355666 ~ 1378514 (-) True XLOC_017813
TCONS_00035203 mRNA downstream 127993 1293988 ~ 1314537 (-) False XLOC_017812
TCONS_00035213 mRNA upstream 46608 1607457 ~ 1635922 (-) False XLOC_017816
TCONS_00035214 mRNA upstream 285232 1846081 ~ 1847433 (-) True XLOC_017818
TCONS_00035215 mRNA upstream 503551 2064400 ~ 2090789 (-) True XLOC_017819
TCONS_00035216 mRNA upstream 557507 2118356 ~ 2134620 (-) True XLOC_017820
TCONS_00035217 mRNA upstream 726449 2287298 ~ 2290529 (-) False XLOC_017823
TCONS_00035199 other downstream 202927 1229788 ~ 1239603 (-) True XLOC_017810
TCONS_00035230 other upstream 1128699 2689548 ~ 2708120 (-) False XLOC_017830
TCONS_00035232 other upstream 1155100 2715949 ~ 2725519 (-) False XLOC_017831
TCONS_00035252 other upstream 1761755 3322604 ~ 3322820 (-) True XLOC_017842
TCONS_00035253 other upstream 1762717 3323566 ~ 3323782 (-) True XLOC_017843
TCONS_00035254 other upstream 1763634 3324483 ~ 3324698 (-) True XLOC_017844

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU395359 True 1275 TUCP 0.60 6 CI01000135 1332364 ~ 1366129 (-)
bowfin (Amia calva) AMCG00007946 True 357 mRNA 0.61 3 CM030123.1 37912578 ~ 37916476 (-)
mexican tetra (Astyanax mexicanus) TU395359 True 273 lncRNA 0.41 1 NW_019172695.1 179432 ~ 179704 (-)