RNA id: TCONS_00035203


Basic Information

Item Value
RNA id TCONS_00035203
length 3133
RNA type mRNA
GC content 0.47
exon number 8
gene id XLOC_017812
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1293988 ~ 1314537 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acacaaaccTGGCCATGTGGAAATTAATCATGGTTCACAATGCATGACGCGGCAGCGGGTTGCTAACAACGGGACATGTCTGGTGATGACGTCTCCGTGCTGGAAGTGGTAACGGTCGTCGGAAGGGCGGTGTGCGCAGGCGCGGCGCTGACAGCCGCACTCTACCTGATCCGCAGAGTGTGTTTAATAATGGCCTGGAAATCCGGAGGAGCGAGCCACGCAGAGCTCGTCAACAACCTCCGCAAGAATGGGATCATTAAATCAGACCGCGTATATGAAGTTATGTTGGCCACAGACCGTTCCCATTTCTCCAGATGTAATCCATATATGGACTCGCCACAATCTATAGGTTATCAAGCAACAATCAGTGCACCACATATGCATGCTTATGCACTAGagctcctccatgaccacctcTATGAAGGAGCAAAGGCTCTGGATGTGGGATCGGGCTCCGGGATCCTCTCCGTCTGCTTTTCCAGAATGGTTGGGCCGACAGGGAAGGTGATTGGCATCGACCATATAAAGGAGCTGGTGGAAGACTCTATAGCTAATGTAAAGAAAGATGACCCTAGTTTGATCACTTCAGGGAGAATCAAACTCATCGttggAGATGGAAGAATGGGTTTTACAGAAGAAGCCCCTTATGACGCCATACATGTCGGAGCCGCAGCTCCCACAGTGCCACAAGCATTGTTGGATCAGCTGAAGCCAGGCGGACGTCTGATTCTGCCCGTCGGGCCGGCAGGAGGAAACCAGATGCTGGAGCAGTACGACAAGCTGGAGGATGGCAGCACCAAGATGAAGCCACTGATGGGCGTGATTTACGTGCCTTTAACAGACAAAGACAAGCAGTGGTCAAGggaTGAACTTTGAAAGGATGGTCCGGCAATACTCATCACActacatgcgcgcacacacacacacacacacacacacaaatggactACACCGAGGAGAGCTTGTATAAATGCTCTATATTCATACCTGTGACGGTCATGAAAGACGGAAGcgttgaatattttatttaaaaaggtggAGTCGGGCTGAAGACGTCACGCCTGCAGTTTGAGAATTGTGTGAATGCAGTTTTTTGttcttctctctctcttattGACGCGCAGGTGCATCATTTTTTTCTTGTGATCACTTCAGTATTACAGTCAGTGGGATTGTTCATGCATCTCAGCTTGTAAACAGAACACCGGATCGGCCCTTGTGCTGAATCCAGCCTGTTATTAAAACATAACTCACCGCTGCATCATGTGTAGGGATCTCTTCTGCTCTGCAGGTCTGTGTTCAGAGAAACGGCTCGTGTTTTCAGCTGGAGCATGTGCTGCTGGAGTATTGGGTAAAGATGCTGTGAGAGATGTGTtagaacaggggtgctcaatcctgttcctggagatctaccttcctgcagatttcagttgctacccgtatcaaacacacctgcctgtaattatcacgtggtgttcaggtcctaattaattggttcaggtgtgtttgatatgggtagcaactgaaatctgcaggaaggtggctctccaggaacagggttgagcacccctgtgtTAGAATGATTCTTTTCCAGTgcttatccctgctgaaaaacccagcttaaaccagcctaggctggttggctggttttagctggttgaccaggctggttttagaggggttttggccatttccaggctgtttTTCCATTTTCtgggaaaatgaccagccaaaaccagcttgaccagcctggtttaagctggatatagctggttttggctggactcccagcttggctagcctgatcaagctggttttagctggtcatctcccagcctgaccagctaagaccaggctggaaaccagcctggaaatggccaaaacccctctaaaaccagccaaccagcctaggctggtttaagctggatttttcagcagggatgggatgctcttaaagtacaggtgtcaaactcagttcctggagggccgcagctctgcacagtttagttccaaccctaattaaacacacctgatcaaactaattgagtccttcaggcttgtttgaaacctacaggtaagtgtgttggagcagggttggaactaaactgtgcagggcttcggccctccaggaattgagtttgacacccctgtcttaAAGTAAACCTCCTTAAGGGGTtagtttcacccaaaaatgaagatttacaCCCTAtgaggcatgggccggtataagattctgatagtatgataaccttggattaaaatatcacagtattgcgattactgctctaaaataagttctgtTGAAATGTAAACCCTGcttaaaaatccagcttaaaccagcctgggctggttggctggttttagctggtcaaccaggctggttttagaggggttttggccatttccaggctggtttccagccatttccattCCCATttctgggagcccagccaaaaccagctatgtccagcttaaaccaggctggtcaagctggttttagctggatttagctggtcattttccagcctgaccagctaagaccaggctggaaatggctgaaaccagcctggaagtggccaaaacccctctaaaaccagcctggttgaccagctaaaaccagccaaccagcctaggctggtttaagctggattttgtAGCAGGGAAACAACAACTTTacatttatttggttaaacaCTACTTTTCTAAGGTACTTTTATCAAAATAGAAAATTTGGATTGGTAAATCTTCAAGCTTTgatctaattgtttttttttttcaaactaataCCTCTTAATTACCTCTTAAATCTCTAAGAAGCGCAAAGGGAAAattattttttgagaaataaatataaattttgctaacaaaaacaaagaactgcaaagggaaaatcAAGCGGAGCAAAAAACGACACTATTTCACTCCTCTTTAATGTGTTTCTCATCACAAGCTTGTCTCTTATCTAAAACAGCAGCAAGTCCCACACAGACCCGCACTCGCGTACAGGACTGCGCTGAACCTCCAGCGCTGGTTTTCTGATTGTAAGCAGTTTTCAATGGCAATTctctgtgcatgtttgtgtgtttcccGCACGCACAAACGGCTTTCAACCAATAAACTCACTGCTAAGCAA

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0032259 methylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-134 Predicted to enable protein-L-isoaspartate (D-aspartate) O-methyltransferase activity. Predicted to act upstream of or within cellular protein modification process and methylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human PCMT1 (protein-L-isoaspartate (D-aspartate) O-methyltransferase).

Ensembl:

ensembl_id ENSDART00000144288

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035196 lncRNA downstream 95279 1198079 ~ 1198709 (-) True XLOC_017809
TCONS_00035187 lncRNA downstream 408628 882451 ~ 885360 (-) True XLOC_017803
TCONS_00036780 lncRNA downstream 759912 530511 ~ 534076 (-) False XLOC_017799
TCONS_00035212 lncRNA upstream 139613 1454150 ~ 1463535 (-) True XLOC_017815
TCONS_00036440 lncRNA upstream 321095 1635632 ~ 1725104 (-) True XLOC_017816
TCONS_00036441 lncRNA upstream 430688 1745225 ~ 1763478 (-) True XLOC_017817
TCONS_00036783 lncRNA upstream 744401 2058938 ~ 2065432 (-) False XLOC_017819
TCONS_00036784 lncRNA upstream 821358 2135895 ~ 2140246 (-) True XLOC_017821
TCONS_00035200 mRNA downstream 25119 1240461 ~ 1268869 (-) False XLOC_017811
TCONS_00035202 mRNA downstream 25125 1253498 ~ 1268863 (-) True XLOC_017811
TCONS_00035201 mRNA downstream 28426 1244123 ~ 1265562 (-) False XLOC_017811
TCONS_00035198 mRNA downstream 54385 1203605 ~ 1239603 (-) False XLOC_017810
TCONS_00035197 mRNA downstream 54392 1203238 ~ 1239596 (-) False XLOC_017810
TCONS_00035205 mRNA upstream 40158 1354695 ~ 1383916 (-) False XLOC_017813
TCONS_00035206 mRNA upstream 41129 1355666 ~ 1378514 (-) True XLOC_017813
TCONS_00035207 mRNA upstream 108655 1423192 ~ 1439256 (-) True XLOC_017814
TCONS_00035208 mRNA upstream 127011 1441548 ~ 1560849 (-) False XLOC_017815
TCONS_00035209 mRNA upstream 127993 1442530 ~ 1560849 (-) False XLOC_017815
TCONS_00035199 other downstream 54385 1229788 ~ 1239603 (-) True XLOC_017810
TCONS_00035230 other upstream 1375011 2689548 ~ 2708120 (-) False XLOC_017830
TCONS_00035232 other upstream 1401412 2715949 ~ 2725519 (-) False XLOC_017831
TCONS_00035252 other upstream 2008067 3322604 ~ 3322820 (-) True XLOC_017842
TCONS_00035253 other upstream 2009029 3323566 ~ 3323782 (-) True XLOC_017843
TCONS_00035254 other upstream 2009946 3324483 ~ 3324698 (-) True XLOC_017844

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_00814972_00824850.mRNA True 1035 mRNA 0.47 7 CI01000325 814693 ~ 824850 (-)
bowfin (Amia calva) AMCG00003815 True 4018 mRNA 0.41 8 CM030121.1 19168766 ~ 19180512 (+)