XLOC_017812 (pcmt)


Basic Information

Item Value
gene id XLOC_017812
gene name pcmt
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1293988 ~ 1314537 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035203
acacaaaccTGGCCATGTGGAAATTAATCATGGTTCACAATGCATGACGCGGCAGCGGGTTGCTAACAACGGGACATGTCTGGTGATGACGTCTCCGTGCTGGAAGTGGTAACGGTCGTCGGAAGGGCGGTGTGCGCAGGCGCGGCGCTGACAGCCGCACTCTACCTGATCCGCAGAGTGTGTTTAATAATGGCCTGGAAATCCGGAGGAGCGAGCCACGCAGAGCTCGTCAACAACCTCCGCAAGAATGGGATCATTAAATCAGACCGCGTATATGAAGTTATGTTGGCCACAGACCGTTCCCATTTCTCCAGATGTAATCCATATATGGACTCGCCACAATCTATAGGTTATCAAGCAACAATCAGTGCACCACATATGCATGCTTATGCACTAGagctcctccatgaccacctcTATGAAGGAGCAAAGGCTCTGGATGTGGGATCGGGCTCCGGGATCCTCTCCGTCTGCTTTTCCAGAATGGTTGGGCCGACAGGGAAGGTGATTGGCATCGACCATATAAAGGAGCTGGTGGAAGACTCTATAGCTAATGTAAAGAAAGATGACCCTAGTTTGATCACTTCAGGGAGAATCAAACTCATCGttggAGATGGAAGAATGGGTTTTACAGAAGAAGCCCCTTATGACGCCATACATGTCGGAGCCGCAGCTCCCACAGTGCCACAAGCATTGTTGGATCAGCTGAAGCCAGGCGGACGTCTGATTCTGCCCGTCGGGCCGGCAGGAGGAAACCAGATGCTGGAGCAGTACGACAAGCTGGAGGATGGCAGCACCAAGATGAAGCCACTGATGGGCGTGATTTACGTGCCTTTAACAGACAAAGACAAGCAGTGGTCAAGggaTGAACTTTGAAAGGATGGTCCGGCAATACTCATCACActacatgcgcgcacacacacacacacacacacacacaaatggactACACCGAGGAGAGCTTGTATAAATGCTCTATATTCATACCTGTGACGGTCATGAAAGACGGAAGcgttgaatattttatttaaaaaggtggAGTCGGGCTGAAGACGTCACGCCTGCAGTTTGAGAATTGTGTGAATGCAGTTTTTTGttcttctctctctcttattGACGCGCAGGTGCATCATTTTTTTCTTGTGATCACTTCAGTATTACAGTCAGTGGGATTGTTCATGCATCTCAGCTTGTAAACAGAACACCGGATCGGCCCTTGTGCTGAATCCAGCCTGTTATTAAAACATAACTCACCGCTGCATCATGTGTAGGGATCTCTTCTGCTCTGCAGGTCTGTGTTCAGAGAAACGGCTCGTGTTTTCAGCTGGAGCATGTGCTGCTGGAGTATTGGGTAAAGATGCTGTGAGAGATGTGTtagaacaggggtgctcaatcctgttcctggagatctaccttcctgcagatttcagttgctacccgtatcaaacacacctgcctgtaattatcacgtggtgttcaggtcctaattaattggttcaggtgtgtttgatatgggtagcaactgaaatctgcaggaaggtggctctccaggaacagggttgagcacccctgtgtTAGAATGATTCTTTTCCAGTgcttatccctgctgaaaaacccagcttaaaccagcctaggctggttggctggttttagctggttgaccaggctggttttagaggggttttggccatttccaggctgtttTTCCATTTTCtgggaaaatgaccagccaaaaccagcttgaccagcctggtttaagctggatatagctggttttggctggactcccagcttggctagcctgatcaagctggttttagctggtcatctcccagcctgaccagctaagaccaggctggaaaccagcctggaaatggccaaaacccctctaaaaccagccaaccagcctaggctggtttaagctggatttttcagcagggatgggatgctcttaaagtacaggtgtcaaactcagttcctggagggccgcagctctgcacagtttagttccaaccctaattaaacacacctgatcaaactaattgagtccttcaggcttgtttgaaacctacaggtaagtgtgttggagcagggttggaactaaactgtgcagggcttcggccctccaggaattgagtttgacacccctgtcttaAAGTAAACCTCCTTAAGGGGTtagtttcacccaaaaatgaagatttacaCCCTAtgaggcatgggccggtataagattctgatagtatgataaccttggattaaaatatcacagtattgcgattactgctctaaaataagttctgtTGAAATGTAAACCCTGcttaaaaatccagcttaaaccagcctgggctggttggctggttttagctggtcaaccaggctggttttagaggggttttggccatttccaggctggtttccagccatttccattCCCATttctgggagcccagccaaaaccagctatgtccagcttaaaccaggctggtcaagctggttttagctggatttagctggtcattttccagcctgaccagctaagaccaggctggaaatggctgaaaccagcctggaagtggccaaaacccctctaaaaccagcctggttgaccagctaaaaccagccaaccagcctaggctggtttaagctggattttgtAGCAGGGAAACAACAACTTTacatttatttggttaaacaCTACTTTTCTAAGGTACTTTTATCAAAATAGAAAATTTGGATTGGTAAATCTTCAAGCTTTgatctaattgtttttttttttcaaactaataCCTCTTAATTACCTCTTAAATCTCTAAGAAGCGCAAAGGGAAAattattttttgagaaataaatataaattttgctaacaaaaacaaagaactgcaaagggaaaatcAAGCGGAGCAAAAAACGACACTATTTCACTCCTCTTTAATGTGTTTCTCATCACAAGCTTGTCTCTTATCTAAAACAGCAGCAAGTCCCACACAGACCCGCACTCGCGTACAGGACTGCGCTGAACCTCCAGCGCTGGTTTTCTGATTGTAAGCAGTTTTCAATGGCAATTctctgtgcatgtttgtgtgtttcccGCACGCACAAACGGCTTTCAACCAATAAACTCACTGCTAAGCAA
>TCONS_00035204
TTTAATAATGGCCTGGAAATCCGGAGGAGCGAGCCACGCAGAGCTCGTCAACAACCTCCGCAAGAATGGGATCATTAAATCAGACCGCGTATATGAAGTTATGTTGGCCACAGACCGTTCCCATTTCTCCAGATGTAATCCATATATGGACTCGCCACAATCTATAGGTTATCAAGCAACAATCAGTGCACCACATATGCATGCTTATGCACTAGagctcctccatgaccacctcTATGAAGGAGCAAAGGCTCTGGATGTGGGATCGGGCTCCGGGATCCTCTCCGTCTGCTTTTCCAGAATGGTTGGGCCGACAGGGAAGGTGATTGGCATCGACCATATAAAGGAGCTGGTGGAAGACTCTATAGCTAATGTAAAGAAAGATGACCCTAGTTTGATCACTTCAGGGAGAATCAAACTCATCGttggAGATGGAAGAATGGGTTTTACAGAAGAAGCCCCTTATGACGCCATACATGTCGGAGCCGCAGCTCCCACAGTGCCACAAGCATTGTTGGATCAGCTGAAGCCAGGCGGACGTCTGATTCTGCCCGTCGGGCCGGCAGGAGGAAACCAGATGCTGGAGCAGTACGACAAGCTGGAGGATGGCAGCACCAAGATGAAGCCACTGATGGGCGTGATTTACGTGCCTTTAACAGACAAAGACAAGCAGTGGTCAAGGTGGAAGTGACTTCTGTCCTCTGTCCCTCTCTCTTCTAGGGCGCAGggaTGAACTTTGAAAGGATGGTCCGGCAATACTCATCACActacatgcgcgcacacacacacacacacacacacacaaatggactACACCGAGGAGAGCTTGTATAAATGCTCTAT

Function

symbol description
pcmt Predicted to enable protein-L-isoaspartate (D-aspartate) O-methyltransferase activity. Predicted to act upstream of or within cellular protein modification process and methylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human PCMT1 (protein-L-isoaspartate (D-aspartate) O-methyltransferase).

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0032259 methylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-134 Predicted to enable protein-L-isoaspartate (D-aspartate) O-methyltransferase activity. Predicted to act upstream of or within cellular protein modification process and methylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human PCMT1 (protein-L-isoaspartate (D-aspartate) O-methyltransferase).

Ensembl:

ensembl_id ENSDARG00000015201

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035203 False 3133 mRNA 0.47 8 1293988 1314537
TCONS_00035204 True 843 mRNA 0.50 8 1296142 1314355

Neighbor

gene id symbol gene type direction distance location
XLOC_017811 lats1 coding downstream 25119 1240461 ~ 1268869 (-)
XLOC_017810 ankrd6b coding downstream 54385 1203238 ~ 1239603 (-)
XLOC_017809 BX248418.2 coding downstream 95279 1198079 ~ 1198709 (-)
XLOC_017808 ube2j1 coding downstream 102078 1177751 ~ 1191910 (-)
XLOC_017807 gabrr2b coding downstream 117357 1158393 ~ 1176631 (-)
XLOC_017813 scara5 coding upstream 40158 1354695 ~ 1383916 (-)
XLOC_017814 themis coding upstream 108655 1423192 ~ 1439256 (-)
XLOC_017815 ptprk coding upstream 127011 1441548 ~ 1560849 (-)
XLOC_017816 CR846082.1 coding upstream 292920 1607457 ~ 1725104 (-)
XLOC_017817 NA coding upstream 430688 1745225 ~ 1763478 (-)
XLOC_017928 CU539064.1 misc upstream 8738868 10053405 ~ 10053701 (-)
XLOC_017799 NA non-coding downstream 759912 530511 ~ 534076 (-)
XLOC_017795 NA non-coding downstream 882069 408561 ~ 411919 (-)
XLOC_017794 NA non-coding downstream 888622 403316 ~ 405366 (-)
XLOC_017787 NA non-coding downstream 1176989 84692 ~ 116999 (-)
XLOC_017819 NA non-coding upstream 744401 2058938 ~ 2090789 (-)
XLOC_017821 NA non-coding upstream 821358 2135895 ~ 2140246 (-)
XLOC_017822 NA non-coding upstream 972135 2286672 ~ 2288716 (-)
XLOC_017824 NA non-coding upstream 1101918 2416455 ~ 2425360 (-)

Expression


Co-expression Network