Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00035204 |
| length | 843 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 8 |
| gene id | XLOC_017812 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 1293988 ~ 1314537 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006464 | cellular protein modification process | biological_process |
| GO:0032259 | methylation | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0008168 | methyltransferase activity | molecular_function |
| GO:0004719 | protein-L-isoaspartate (D-aspartate) O-methyltransferase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990415-134 | Predicted to enable protein-L-isoaspartate (D-aspartate) O-methyltransferase activity. Predicted to act upstream of or within cellular protein modification process and methylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human PCMT1 (protein-L-isoaspartate (D-aspartate) O-methyltransferase). |
| ensembl_id | ENSDART00000152436 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00035196 | lncRNA | downstream | 97433 | 1198079 ~ 1198709 (-) | True | XLOC_017809 |
| TCONS_00035187 | lncRNA | downstream | 410782 | 882451 ~ 885360 (-) | True | XLOC_017803 |
| TCONS_00036780 | lncRNA | downstream | 762066 | 530511 ~ 534076 (-) | False | XLOC_017799 |
| TCONS_00035212 | lncRNA | upstream | 139795 | 1454150 ~ 1463535 (-) | True | XLOC_017815 |
| TCONS_00036440 | lncRNA | upstream | 321277 | 1635632 ~ 1725104 (-) | True | XLOC_017816 |
| TCONS_00036441 | lncRNA | upstream | 430870 | 1745225 ~ 1763478 (-) | True | XLOC_017817 |
| TCONS_00036783 | lncRNA | upstream | 744583 | 2058938 ~ 2065432 (-) | False | XLOC_017819 |
| TCONS_00036784 | lncRNA | upstream | 821540 | 2135895 ~ 2140246 (-) | True | XLOC_017821 |
| TCONS_00035200 | mRNA | downstream | 27273 | 1240461 ~ 1268869 (-) | False | XLOC_017811 |
| TCONS_00035202 | mRNA | downstream | 27279 | 1253498 ~ 1268863 (-) | True | XLOC_017811 |
| TCONS_00035201 | mRNA | downstream | 30580 | 1244123 ~ 1265562 (-) | False | XLOC_017811 |
| TCONS_00035198 | mRNA | downstream | 56539 | 1203605 ~ 1239603 (-) | False | XLOC_017810 |
| TCONS_00035197 | mRNA | downstream | 56546 | 1203238 ~ 1239596 (-) | False | XLOC_017810 |
| TCONS_00035205 | mRNA | upstream | 40340 | 1354695 ~ 1383916 (-) | False | XLOC_017813 |
| TCONS_00035206 | mRNA | upstream | 41311 | 1355666 ~ 1378514 (-) | True | XLOC_017813 |
| TCONS_00035207 | mRNA | upstream | 108837 | 1423192 ~ 1439256 (-) | True | XLOC_017814 |
| TCONS_00035208 | mRNA | upstream | 127193 | 1441548 ~ 1560849 (-) | False | XLOC_017815 |
| TCONS_00035209 | mRNA | upstream | 128175 | 1442530 ~ 1560849 (-) | False | XLOC_017815 |
| TCONS_00035199 | other | downstream | 56539 | 1229788 ~ 1239603 (-) | True | XLOC_017810 |
| TCONS_00035230 | other | upstream | 1375193 | 2689548 ~ 2708120 (-) | False | XLOC_017830 |
| TCONS_00035232 | other | upstream | 1401594 | 2715949 ~ 2725519 (-) | False | XLOC_017831 |
| TCONS_00035252 | other | upstream | 2008249 | 3322604 ~ 3322820 (-) | True | XLOC_017842 |
| TCONS_00035253 | other | upstream | 2009211 | 3323566 ~ 3323782 (-) | True | XLOC_017843 |
| TCONS_00035254 | other | upstream | 2010128 | 3324483 ~ 3324698 (-) | True | XLOC_017844 |
