RNA id: TCONS_00035188


Basic Information

Item Value
RNA id TCONS_00035188
length 2852
RNA type mRNA
GC content 0.49
exon number 2
gene id XLOC_017804
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 902412 ~ 915234 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTCGCAGTCGAACAATTACAattgaaacacacagagaaatgACACGAAGCTTCAGAGGAAACGTTGGATAGCGTGGTGATGTAATCAcgttgcatttacatttagtcatttagcagatgcttttatccaaagcgacttacaattgaggacaaggaagcaacttacacaactataagagcagcaATGAAGAAGTGCTCTAGGCAAGTTTCAAGTTGTTTCAAGTTGTGAAAACTGTaagcaaaacattagtcattttttattttattttttttgtaaaacagtttcttgaagacagcgagtgactctgccgttctgatgcagttcgggagttcattccaccaactgggcagattgaacgcgagagttcgggaaagtgatttcttccctctttgggatggaaccacgaggcgacgttcattcacagaacgcaagtttctggaggacacatacatctgcagaagtgagagcagatcaGAAGGGGcacagccagaaatcgctttgtaggcaaacatcagagctttgaatttgatgcgagcagcaactggcagccagtgcaaacggatgagcagcggagtgacatgtgctcttttaggttcattaaagaccactcgtgctgctgcgttctgcaCATGTTAATCAGTGTACTGGAACAGGTCAAACAGGGAGCATGAAAGGAAtatcaaaaagcaactcatataagcaccttaaaaggatagttcacgcaaaaatcaAAAGCTGCTCACTATTGACTCTCCCTCAACCTtaatgtgtttctttcttctgttgaacgcaagagaagatattttaaagaatgcttaaaacctgtaaccactgacttccattgcaggaaaacaaatactatggaagtcaatgaaagTTCTCTCTTTCTTCAACAGATCTACTTTTGGGTTTGGAGCAAAttatgatgtcagaattttcagttttaggtgaactgcccctttagtCATATCATTGCCTCATTCAGATTTAGTTGAATAATTTGATcgctgatgtccatgtaagcgtagtcattCTCTCCATTTCCTCCGACAGGTTTCCTCTAGAGCATCTCTGACCATGCTGTTCCCGGCCTCAAAGTCCGATGTTAAATCTGTCCTGGACGGAGTGGCGGAAACCACCTTCAGAACCATCACCTCCGGCCTGCAGTACATCGGCTCCAATGACATCGGCTACGACGACCACATTATTGACGGAGACTTCTCCAAAAGCGGATACCCTCTGCCCAAGCCGTTCGCAGCCTACCGCAGAAGCTCCTTCGCGGATAAAGTAGCCCCAGATGAGGAGCTGATCGTCAAAGGTCTCCCCTTTTATCCCACTAACAGCTCTGATGTTTTCGGTAATTGGAGCCATGCTGAAGACGGCAGTCTGCAGTGCGGGGAGAACTTTATGGATATGGAGTGCTTCATGATACTGACTCCCAGTCAGCAGCTAGCCATAGCGGTGTTATCTCTAACTCTGGGGACGTTTACGGTGTTGGAGAATTTGGTGGTGTTGTGTGTGATTCTGCAGTCGCGTACGCTGCGCTGCAGGCCGTCCTACCACTTCATTGGCAGCTTAGCCATCGCTGATCTCCTCGGCAGTGTTATATTCGTCTACAGCTTCCTAGACTTTCACGTCTTTCACCGAAAAGACAGCCCTAACGTTTTTCTGTTCAAGCTAGGAGGCGTTACGGCATCCTTCACCGCTTCTGTGGGAAGCCTGTTTCTCACTGCCATCGACCGATATGTGTCCATCCATCGCCCGCTGTCGTACCGGCGCATCGTGACGCGCACGAAAGCAGTGATCGCCTTCTGCATGATGTGGGCGATCTCTATTATCATCGCCGTGCTGCCGCTGCTGGGCTGGAACTGCAAGCGGCTCAACTCGGTGTGCTCCGACATCTTCCCGCTCATCGATGAGAATTATCTGATGTTCTGGATCGGCGTGACCAGCGTTCTGGTCTTATTCATCATCTACGCGTACATGTACATCCTCTGGAAGGCCCACCATCATGCAGTGAGGATGCTGAGGCGCACGTCACAGAAGAGCCTGGTCGTGCACTCGGCGGACGGCACAAAGGTGCAGACCCCCCGACCGGACCAGGCACGCATGGACATCCGTCTGGCCAAGACGCTGGTGCTGATCCTGGTGGTGCTGGTGATCTGCTGGGGGCCTCTGCTGGCCATCATGGTGTATGATCTGTTCTGGCGGATGGGGGACAACATCAAGACCGTGTTTGCGTTCTGCAGCATGCTGACGCTGCTCAACTCCACCGTCAACCCCATCATCTACGCACTGCGGAGTAAAGACCTGCGCCGGGCCTTCCTGGCCGCATGTCAGGGCTGCCGCGGCACCTCCACCACCCCCCTGCAGCTGGATAACAGCCTGGAGTCGGACTGCCATAGGAACCAGCACCGCGCTGCTGAGAGCTGCGTCAAGACCACTGTGAAAATCGCCAAACTGACAATGTCCGTCTCAGCGGAGACCTCGGCCGAAGCCGTCTGATTGTATGAGCAGCGCAGGGCTGTGGAAAGTGCATGTAGAAATCTGTTATAtggatgtgtgtatttatatacacacactacctgtacctgacaaaagtcttgtggtggaTTTCagtttaagagcaacaaataatatcttgacttcttggtgatcatttggaaaagtgtcagaaggtggattaatcccatgaatcatctgctgatctgcatcccaatcatcaccaatactgcagaagacctactggaaccagcatagaccaagattctcagagaaatcagtcaagtctggtgaaggagaaatcatggatTGGGGTGGAGGacatgacttttgtcaggcattgtgtaat

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0019222 regulation of metabolic process biological_process
GO:2000253 positive regulation of feeding behavior biological_process
GO:0038171 cannabinoid signaling pathway biological_process
GO:0001889 liver development biological_process
GO:0008610 lipid biosynthetic process biological_process
GO:0007409 axonogenesis biological_process
GO:0007413 axonal fasciculation biological_process
GO:0006555 methionine metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004949 cannabinoid receptor activity molecular_function

KEGG:

id description
ko04015 Rap1 signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-040312-3 Predicted to enable cannabinoid receptor activity. Acts upstream of or within several processes, including axon development; methionine metabolic process; and positive regulation of feeding behavior. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in central nervous system; cranial ganglion; digestive system; head; and oocyte. Human ortholog(s) of this gene implicated in obesity; schizophrenia; and type 2 diabetes mellitus. Orthologous to human CNR1 (cannabinoid receptor 1).

Ensembl:

ensembl_id ENSDART00000011283

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035187 lncRNA downstream 17052 882451 ~ 885360 (-) True XLOC_017803
TCONS_00036780 lncRNA downstream 368336 530511 ~ 534076 (-) False XLOC_017799
TCONS_00036781 lncRNA downstream 368348 531290 ~ 534064 (-) False XLOC_017799
TCONS_00036782 lncRNA downstream 368370 531502 ~ 534042 (-) True XLOC_017799
TCONS_00035176 lncRNA downstream 470116 430001 ~ 432296 (-) True XLOC_017796
TCONS_00035196 lncRNA upstream 288126 1198079 ~ 1198709 (-) True XLOC_017809
TCONS_00035212 lncRNA upstream 544197 1454150 ~ 1463535 (-) True XLOC_017815
TCONS_00036440 lncRNA upstream 725679 1635632 ~ 1725104 (-) True XLOC_017816
TCONS_00036441 lncRNA upstream 835272 1745225 ~ 1763478 (-) True XLOC_017817
TCONS_00036783 lncRNA upstream 1148985 2058938 ~ 2065432 (-) False XLOC_017819
TCONS_00035185 mRNA downstream 8038 851583 ~ 894374 (-) False XLOC_017803
TCONS_00035184 mRNA downstream 8038 851583 ~ 894374 (-) False XLOC_017803
TCONS_00035186 mRNA downstream 27605 861819 ~ 874807 (-) False XLOC_017803
TCONS_00035183 mRNA downstream 97167 803108 ~ 805245 (-) True XLOC_017802
TCONS_00035182 mRNA downstream 110624 778608 ~ 791788 (-) True XLOC_017801
TCONS_00035190 mRNA upstream 33926 943879 ~ 1120056 (-) True XLOC_017805
TCONS_00035191 mRNA upstream 222139 1132092 ~ 1151265 (-) False XLOC_017806
TCONS_00035192 mRNA upstream 222626 1132579 ~ 1141722 (-) True XLOC_017806
TCONS_00035193 mRNA upstream 248440 1158393 ~ 1174266 (-) False XLOC_017807
TCONS_00035194 mRNA upstream 248782 1158735 ~ 1176631 (-) True XLOC_017807
TCONS_00035199 other upstream 319835 1229788 ~ 1239603 (-) True XLOC_017810
TCONS_00035230 other upstream 1779595 2689548 ~ 2708120 (-) False XLOC_017830
TCONS_00035232 other upstream 1805996 2715949 ~ 2725519 (-) False XLOC_017831
TCONS_00035252 other upstream 2412651 3322604 ~ 3322820 (-) True XLOC_017842
TCONS_00035253 other upstream 2413613 3323566 ~ 3323782 (-) True XLOC_017843

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU530231 True 3723 lncRNA 0.41 3 CI01000325 473099 ~ 523451 (+)