RNA id: TCONS_00036778


Basic Information

Item Value
RNA id TCONS_00036778
length 396
lncRNA type antisense_over
GC content 0.53
exon number 2
gene id XLOC_017794
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 403316 ~ 405366 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTTTTACGACGAGGAAATGCGGAATCTAGTCATGAGAATGAAATGCGCCATCTAAAAGTGAAAGACGCGGCTGCTGGAGTCTACAGGAGGCAGGTTAGTCCTCCGTGATCTGCTTGGTCTCCTCTGGCTTTTTGGAAATGACTCTGACGTCGAAGGGGAAAAAGAAATCGGTCAGTGCTTTGGCGTCTTTGGGGTCTAAAGCGTACTCCTGCGCCAGCTTCTCTGCAGTCCAGGTTTCCGGCAGGTTCTTGTGATTGTTCAGGGCAGTGATGGCTTCTACCAGAGAGAGTTTTCCTTTGGGGACATCGCTGACGTCACAGAAACCGTAGGGCTCTCCCGGCAGACTGAGCTTCAGCTGTCGGCGCTGCGTCTCCTGCTCCAGCGTCTGAACTAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036777 lncRNA downstream 220535 182349 ~ 182781 (-) True XLOC_017790
TCONS_00036439 lncRNA downstream 286344 84693 ~ 116972 (-) False XLOC_017787
TCONS_00036776 lncRNA downstream 315035 84692 ~ 88281 (-) False XLOC_017787
TCONS_00036779 lncRNA upstream 3195 408561 ~ 411919 (-) True XLOC_017795
TCONS_00035176 lncRNA upstream 24635 430001 ~ 432296 (-) True XLOC_017796
TCONS_00036780 lncRNA upstream 125145 530511 ~ 534076 (-) False XLOC_017799
TCONS_00036781 lncRNA upstream 125924 531290 ~ 534064 (-) False XLOC_017799
TCONS_00036782 lncRNA upstream 126136 531502 ~ 534042 (-) True XLOC_017799
TCONS_00035174 mRNA downstream 118451 276753 ~ 284865 (-) True XLOC_017793
TCONS_00035173 mRNA downstream 191396 196541 ~ 211920 (-) True XLOC_017792
TCONS_00035171 mRNA downstream 214386 186277 ~ 188930 (-) False XLOC_017791
TCONS_00035172 mRNA downstream 214855 186279 ~ 188461 (-) True XLOC_017791
TCONS_00035168 mRNA downstream 220475 159277 ~ 182841 (-) False XLOC_017790
TCONS_00035175 mRNA upstream 13147 418513 ~ 438646 (-) False XLOC_017796
TCONS_00035177 mRNA upstream 36576 441942 ~ 456998 (-) False XLOC_017797
TCONS_00035178 mRNA upstream 37250 442616 ~ 463786 (-) True XLOC_017797
TCONS_00035179 mRNA upstream 78890 484256 ~ 487783 (-) True XLOC_017798
TCONS_00035180 mRNA upstream 210748 616114 ~ 641511 (-) False XLOC_017800
TCONS_00035199 other upstream 824422 1229788 ~ 1239603 (-) True XLOC_017810
TCONS_00035230 other upstream 2284182 2689548 ~ 2708120 (-) False XLOC_017830
TCONS_00035232 other upstream 2310583 2715949 ~ 2725519 (-) False XLOC_017831
TCONS_00035252 other upstream 2917238 3322604 ~ 3322820 (-) True XLOC_017842
TCONS_00035253 other upstream 2918200 3323566 ~ 3323782 (-) True XLOC_017843

Expression Profile

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