RNA id: TCONS_00035180


Basic Information

Item Value
RNA id TCONS_00035180
length 2353
RNA type mRNA
GC content 0.44
exon number 17
gene id XLOC_017800
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 616114 ~ 641511 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAGACATCTCAGATCGTGAAGGCCATTGGGAAGAATGACTTTCTTCGTCGTCTGGATGAGGAACAGATTAGCATGATGGTGGATCTGATGAAGGTTCTGGACTGCCGTGCGGGTGATGAAATTATCAAAGAGGGCACGGAGGGAGACAGCATGTACATTGTTGctgCGGGGGAGCTGAAGGTTACTCAGGCTGGACGTGATTTGCGTATTTTGAGCCCTGGAGATATGTTCGGGGAACTGGCCATTCTATACAACTGCAAACGAACAGCATCAGTCAAAGCCATCTCTGCGGTAAAGTTATGGTGTATCGAGAGACAAACGTATCGGAGCATCATGACCAACAAATCCAAGATGAAACGAGAGCAGCTGATGGGCTTCCTGAAAACGGCGCGCACTTTGAAGGCTCTGAATGATGTGCAGTTGTCAAAAATCATCGACTCCATGGAAGAAGTGAGATTTCAGGACAATGAAGTGATTGTCAGAGAAGGAGCAGAGGGCAACACTTTCTATATCATTCTCAAAGGGGAGGTGTTAGTGACGAAAAAAGTCAACGGCCAGCAGAAAACCATCCGTAAAATGGGCGAAGGGGAACACTTTGGAGAGCTGGCTCTCATACGAGAGATCCTCAGGACAGCCACGTGCACGGCTGTGGGAGTCGTCATTTGCTTTTCAATCGATAAAGATGCTAATGTCTCGGAGATTGATGAAAAGCCAGAGAAAGCTCGGCCGGAAACATCTCTAAAGCTGAAAGATCTCGTCCCCGTTCTGTACCAGGAGGGAAGTTATCAAGGAGATCCCGTCACTCTTGGAATCGGCGGTTTTGGAAAAGTGGAGCTGGTAACCACCCTGGAGCACAGAAAGTACTTTGCGATGAAGAGGATCAGTAAACAGCATGTTGTTGCGAAGAAGCAGGAGGCTCACATTCTGCTGGAAAAGAAAATTCTCCAGGCTATCCGATGCGATTTCATTGTCAGGCTGCATGCTGCCTTCAAAGACTCACGCTACGTCTACATGATAATGGAGTTTTGTCCTGGTGGGGAAATCTGGACTAAACTGAAAGAAGCAGGACGCTTTGAGGAGAAAATAGCCGTGTTCATAACAGCGTGTGTGGTGGAAGCCTATGCATACCTCCATAACAAAGGGATCCTGTACCGAGACCTGAAACCAGAAAACCTCATGCTGGACTCTAAAGGATATGTGAAACtggtTGATTTTGGTTTTGCAAAAGAGCTTTCTCGGGGTGAAAAGACATACTCGTTTTGCGGCACACCTGAGTATATCTCTCCAGAGATCATTCAGAACCAGGGCCATGACATCGCTGCAGACTTCTGGTCGCTTGGTGTTCTAATCTACGAGCTTCTTGTGGGCAGCCCACCCTTCTCCAGTTCAGAGCCGCAGAAGATCTATGCCAAAATCTTGGATGGAGTGCTGAATTTCCCTTCATATATGGGTGAAGGTGCCAAATCTATCATCAGTAAACTGTGCAGGCTGCGTCCTGGACAGCGTTTGGGCAACACGAAAAATGGAATCAAAGATGTGCGACATCACAGGTGGTTTAATAGCATTAACTGGCATAAATTAAGAATGGGGCAGCTGGAGGCACCGACGGTTCGGCTCATAAGAAAGGGTCCTTGCTATATAAACTTCGACCGCTTTCCTTATGACAAGACCCAGGCGGAGGAGGAATTCTCAGGCTGGGATTGTGACTTCTGAACAACTGCCAAGTAGTCTTAAGATCTCCAACATATCTCAAACTCTCAGGTTATCTCATGTTTAACACCCATAGCATATCTTAGTGGAAGATCAGTACTTTCTGACGATTGGTATATGACCGAACTTTAGTATCTTTCcacaaagagaaagtaaaagagTTCTTTGCAGGACTTGTGCTAGTGAGGTGTCAAATGCCCATTTCAAATGCATTGTTTTTATTCTGAAGTGATTTCAGACACTGTGATTCATAGGAGCTAGAGAAAACTGGAGCCAACTTTGCACTAGAAAcagtgaaaattattattatttttcaatgtaatgtaaaaatagaCATTGGGATTTGTCTCCATTGTCGTACACGATACCTTATGTACATGCACTTGTCAGACTATTCATGTTTAGGCGAATCAGTCAGATTATAATGTACAttctttatttacttgtttaatgaGCCAAATGTTATCCATGAACTGTCATTAGTAACTGGATGTTGAGACTTTTATGtgtaatttattttcagtaatttgTTTTTGTGGCAACCACAAAGCTTTAGTTTTTCAGTCAAAGGACTGTGATGTCATTGTGGTGTTGTACTTTTGTTGTTGATGTATTATAATAAAgaattaggcccaatcccaa

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004692 cGMP-dependent protein kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4745 Predicted to enable ATP binding activity; cGMP binding activity; and cGMP-dependent protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Is expressed in gall bladder; intestine; kidney; ovary; and testis.

Ensembl:

ensembl_id ENSDART00000017857

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036780 lncRNA downstream 82038 530511 ~ 534076 (-) False XLOC_017799
TCONS_00036781 lncRNA downstream 82050 531290 ~ 534064 (-) False XLOC_017799
TCONS_00036782 lncRNA downstream 82072 531502 ~ 534042 (-) True XLOC_017799
TCONS_00035176 lncRNA downstream 183818 430001 ~ 432296 (-) True XLOC_017796
TCONS_00036779 lncRNA downstream 204195 408561 ~ 411919 (-) True XLOC_017795
TCONS_00035187 lncRNA upstream 240940 882451 ~ 885360 (-) True XLOC_017803
TCONS_00035196 lncRNA upstream 556568 1198079 ~ 1198709 (-) True XLOC_017809
TCONS_00035212 lncRNA upstream 812639 1454150 ~ 1463535 (-) True XLOC_017815
TCONS_00036440 lncRNA upstream 994121 1635632 ~ 1725104 (-) True XLOC_017816
TCONS_00036441 lncRNA upstream 1103714 1745225 ~ 1763478 (-) True XLOC_017817
TCONS_00035179 mRNA downstream 128331 484256 ~ 487783 (-) True XLOC_017798
TCONS_00035178 mRNA downstream 152328 442616 ~ 463786 (-) True XLOC_017797
TCONS_00035177 mRNA downstream 159116 441942 ~ 456998 (-) False XLOC_017797
TCONS_00035175 mRNA downstream 177468 418513 ~ 438646 (-) False XLOC_017796
TCONS_00035174 mRNA downstream 331249 276753 ~ 284865 (-) True XLOC_017793
TCONS_00035182 mRNA upstream 137097 778608 ~ 791788 (-) True XLOC_017801
TCONS_00035183 mRNA upstream 161597 803108 ~ 805245 (-) True XLOC_017802
TCONS_00035185 mRNA upstream 210072 851583 ~ 894374 (-) False XLOC_017803
TCONS_00035184 mRNA upstream 210072 851583 ~ 894374 (-) False XLOC_017803
TCONS_00035186 mRNA upstream 220308 861819 ~ 874807 (-) False XLOC_017803
TCONS_00035199 other upstream 588277 1229788 ~ 1239603 (-) True XLOC_017810
TCONS_00035230 other upstream 2048037 2689548 ~ 2708120 (-) False XLOC_017830
TCONS_00035232 other upstream 2074438 2715949 ~ 2725519 (-) False XLOC_017831
TCONS_00035252 other upstream 2681093 3322604 ~ 3322820 (-) True XLOC_017842
TCONS_00035253 other upstream 2682055 3323566 ~ 3323782 (-) True XLOC_017843

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_00114983_00136246.mRNA True 2548 mRNA 0.42 20 CI01000325 114436 ~ 136246 (-)