XLOC_017792 (znf292b)


Basic Information

Item Value
gene id XLOC_017792
gene name znf292b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 196541 ~ 211920 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035173
CGTGACAGGCTGTGCGTACGCGGCGGAATTGTAAGTGAAGATGGCGGACGAGGAGGCCGAGCAGGAGCGCAGCGCGCGGAGCGACACTTCCAGCGCGTTGCAGGCGCTCGCGACGCGGCTGCAGGAGATCAGGGGTGCGCTGGAGGACCGCGCGGAGCCCGCGGAGGAGTCCGCGTCGCAATACTGCTATCAGTTCTGTCAGACGCTGCTAGAGTACGCCAGCCTGTGGAGGATTGAGGATGAGCCCCTGCCGGTGCTGGAGGTGTACATCACGGCGCTGCTCAGCTTCGCTCAGGCCTGTCCGCTGCTGTCGGCGCAGTGTGAGGAGGTGCCGCTGCTGCTGGAGAGACTCTCGCTGAGTTGTGCAGAGCTGCTGCTTTCTCTGCCGCGGAATATCCCAGATGCATTGTGGGACAGGTTTAGGACATCCGTCCAGatcgcTCATCCTCTGGTTCAGGAGAAGGGAATCAGCCATCTGACCATCCTCTCCACCATCGCCAGAGAGCAGGGCGTCTGGAGTAACCCGACCCTGCAGGCGATCCTGTCCAGTGAGACGCCGGCCGGGGAGGAAGTGCACGAGTTCCTGAAGGCGGAGGGGCCGACGCTGCTGCGCATGCGGCTGAAGCAGCTGATGAAGGAGGGCCGAGCGGATCAGGCTGCGGCGCTGGCCAAGGCCTGTGCGGACCTCTCCCAGTTTGAGGAGAAGGGACACTTCAAGCAGATGCACCTGGTGTGTTTGTGCACGGTTGCTCCACAGGACGTCGTAATGGAAGAGCTCTCGAAAGTGGACTGCCGTGATGCTTTAGAGATGATTTGTAACCTCGAGGCTGACGGCGAGGAGAAGGCTGCGTTCACATTGTGCTCTGCTTTTTTGACACGTCAGATTCTGCAGGAGGATTCCTACTGTGCTTGGGAGTTGACTCTGTTCTGGGGGAACCTGCTCAAGCGGTTAGAGCCTTCAGAGCAAGGCTTTTTGGACAGATGCCGTCAGATGTCGTTCCTGTCTAAAACTGTGTTCCACCTACTCTTCTTCATTAAATTCATCCAAACAGAGATGGGCAAAGTTGGACTTCCAACCTGTGTTGAGATCTGCATCCGCGCCCTGCGATTGGATTCATGTGAAGGAAGCACCAAAGCCACTGTCTGCAAAACCATTTCTTGCCTCTTACCCTCTGACCTGGAGGTGAAAAGGGCCTGCCAGCTGACGGAGTTTCTCCTGGAGCCCACCGTGGACTCGTACTATGCAGTGGAGACTCTCTACAATGAGCCAGACCAGAAGCTGGACGTGGAAGATCTGCTGGTATCAAACTCGCTGCGCTGTGAGCTCCTGTTAGTCCTCAAAACCCAGTGGCCTTTCGACCCCGAGTACTGGAACTGGAAGGCCTTAAAACGCCACTGTTTAGGACTTATGGGAGAGGAGGCCTCAATAGTGTCCTCCATTGATGAACTGAACGATGGAGACCTTGAAGGCCTGGGGGAATTTAACGAGGACTTCAAGGATATGTCTCAGTGTTTTTTAGACACAACAAATGAACTGAATGATATGGCAGATCAGAAGCAGAAGAACAGAGAGATGAAGAAGTTGCGAGAAAAGGGCTTCGTTTCCGCTAGGTTTAGAAACTGGCAGGCCTACATGCAGTACTGTGTTTTGTGCGACAAGGAGTTTCTCGGTCATCGAATAGTGCGTCATGCAGTGACTCACTTCAAAGATGGAAGCTACTTCTGCCCGATATGTTTGGAGACCTTTGAAACTAAAGAGACTCTTGAACCACATGTTGCATCGCATGTGAAACTGTCTTGCAAAGAGCGTCTCGCTGCAATGAAGACTAGCAAGCAGCTAGCCAGCCCCAAAACAGCCACTCCGGACATACCCTCCCTGAAAGCTAAGAGCAGTGAAAATCAGGTGCGTAAGCCCAAGACAAAAAGCAGCAGCGGTGGGCAGGCCAACAAGCTGAGTAGTAAGGGCAGCAATGACTCCGAGGGCTTTGGAGGTGAAGGGAATACTTGTCCAGTGCAGTACTGCAGGAAGGGATTTAAATATTTCCGCAATCTCATTGCCCACGTGAAAGATCATGGCGACAATGAAGAAGCCAAGCGCTTCCTTGAAATGCAGAGCACTAAAATAGTGTGCCAGTACTGCCGTCGCCAGTTTGTCAGCGTCGACCACCTGAACGATCACCTGCAGATGCACTGCGGCATCAAACCCTACATTTGCATTCAGCTTAACTGCAAAGCCAGCTTCAACTCCAACACAGAGCTCATCGTGCATAAGAAAGAACACACTGTCTTCAAGGCTAGGTGCATGTTTCCAGGATGCGGCAAGATTTTTCACGAAGCCTATAAACTGTATGACCATGAGGCACAGCATTACAAAACATTTACCTGCAAAGCACCAGACTGTGGTAAAGTGTTTCATTCACAGTCTGAGTTGGACCTCCATGCCGAGAGCCACATCACAAAAGTGGAAAGCAAAAACACTGAGAGTCAAAGTATTGAACCAGCAGAACCTCACCCAGAACAATGCAATCAAACAGAGCAGGACTCAGCCCAGCCTGACCCTCTCTCAGTCATGGATTTAAATGACAGAGGCGCAGAGTCTGAAGAAGATCGCCAATCAGGCATGGTCATAGTCAAGCATTCTGTTGAAAACATGCTAAATAGCGAATTTGCAGTTTCTGCTGACTGTGTTCAACCTGGGACAAGTAAACCTGATCAACTTCCCACCCACCAGCACATCCCTCAGATCAATGACCACCCCGGCAAGTCAACTGAGGGGACTCGCGCGTCTCGGTTAAAACCACATAGACAGGAGGAGTCTCTCTTGGAGGCATTGATGAGCAATTCAGATCCCATGCCATCTACGTCTTCATATCAGAGTGTATTAGAGGACTTACTGCCTGTCCCAGCAACTAATGGTCAGCTGCAGTCGGCAGACTCTGCTTCTACTACTCCACTATATAACAATGGAGTATTTAGGCAGTACAATCCCAATCCCGTAACTCCATCTCAGGCATCATATCAGAGCCTGCACAGTAGTAGAAGGACGCCTCCACCACAGGCTGCACACAACGCAACACCGCTCGTCTCACTGGGTCAGATGCTTCCTCCCGTTTCTCAGACACTTCCTTTGCAAATGGCTTCCGTACCAAACGATGGACAAGTTTTGGAAAACAAATGTGTGAAACCGATAGACACAACGATTGTCCAAGTGAAAGAGAGACACAAATGCCCTCACGAAACTTGTACTCGAGACTATAGCTCGTATAGAAGTGTTACGAAGCACATGAAGGCTGTTCATCCCGACTTTTACACGCAGTGGAAACTAGCCAAGAAGAACAATGTGGCAGGCCGCTCAAAACACCGATCTGTAAATGGAGGCCACAGTTCTGTTGTGACTCCTCGAGACCAGCCGGCCCAAAGACGTCCTGCTGTTCAAACACAGAAATCCCTCAGTCAGCCTACGTGCTACCCATCTAACTGTGCAAACCCCAAATATCCTTCCGTCTCTTCTCACATCGCCGCTTCCCCAGGGCACATCCGTTCCAATGAAATGGACAATATATTAGATCCTATTGTTCTCTCTCAGCTTGGCAATGGTAATAATCAGCCTCAAATGGCAACAGACCACTTGTGGGACCCCAGGAATAATTCAGTACTCCAGCAACAGAGATGTCATTCAATGACGCAAAGCATGAACACTCTTTCTAGCAGTCATTTTACTCACATGAACCCAGCTTCCAATGATGATGCACAGCAGAGAGGCACAAGCTATACCACCCTGCAGAGTAAGCGTAATGGCTACCCAGTGCCAGCTCGAGCAGACATCAATCAAAAACTCAGTAACACCTCAAATGATGACCTGCATGCAGTTGGCGAACTCAATTCAACTCAAGTCATGGGTCCTAATGCGGTGGTAACTGCGCAATCTTCAGCCGAGACAAACCTGGGATCTGCTCAGATGTCTGTGTTGTCCTCTTATGCAGACACTATGAACAGTTCAGTTCCCAAAGAGTCCTCAGCGGCTTACCTGCCGCAAGCAGAGGATTCCTTTCCTCCAGTACCCAGCGCTCAGTGTTTGGTGAAGTTGGAGAGGGAAACCACCGTAGGCTTTCCACTTTCTAACAATGCTCCCCCATCAAATGGCAGTTCTCCAAGTTCACAGGATAACACTGGGAATGCGTCAAGTGATGGGGAGCACAAAAAAGTTAAGCGAAACAGAAGAACAAAATGGCCTGCTATTGTTAAAGATGGCAAGTTCATCTGCTGCAGGTGTTACAGAGAATTCAATAGCCCCAAGTCTCTGGGTGGACATTTGTCTAAGCGCGCTTAttgcaaaccatttgaggaagCTGACCTGACAGCAGACCTCCCCAGCTCATTTCTTGATCTTCTCAACTCGCCTCACCCCGCCCCATCCTCACATGTGACCCTGCCACAGATCAAGGGCCCCCTTGATCCGAAGCTGTACCCAAACGTCACTTTCCCCCAAGCCAATGGCACTTACACTAGCATTGACAAACAGATGGGAGGAACATTCAAGCAAAGCCAGTCGAGTCCGTGTGCGGGCTCTGCACAGGAACAGCAGATGGTGCCAAACCCCTGTGGTTCATATGCTCAGAGCAGTCGGCTGTCTGAAACCAGTGTCATACAGCACACAGGTAGTGTCAAACATCAACTTCAACCAAGTTATTCTGAGATGTCCAGCACGCTGTTTAACGACAGTGTCAGTGATCCTTTGCTTACTCAGCTGCTAGCAGATGACCGGTCTACATCCAGCCTGAATAGCAGTTCCTCAGATCAAGTTTTTCAAAAtgaaactttaaacagaatgaAAGACAACAAGGAGAAGACACCCAACATTAATGTAAGCGATTTATCAAATGATGGACTTCTGGCAGCCATGGCAAACTTCACTCAAAATATGGTGTCTGAAAAGAGTGTCAAAGAAAGATTGCGAGAGCAGATATTAGCTGGAGAGTTTCACAAAAAGAGCAGCCTGCCTCGTGGATCAAGTGTTGACAGTTCCTCCTCACAAATGTCTGTGTCGAGTCCTGTCAGTGGGGATCTACAGCGTACCTCAAACCTGGTTACGAATACGCCTCAGAGTGAGCAGCAACCTAATGTAAACGCATCTGACGTCCTTGTTGAGACTGTTTCACAAATGAGCCCAAACGATGGCTTAAATCACACCATGTCATCTGTGCTACCGGAAGGTGCTGTCAACGATCAGCCTAGCAATATACCAATTACCAGTGTCGATGAAGTGTTAGAAATCCAGAAAGCACTGGAGAAGCTTGATCTAGACAGAGAAATTAGTGAAGTTATCAGAACTGTAGATGATCCCGCTGTGATACCTGTACAGCCTACTAAGCCAGAGCTTAAGCCTACTAAGCCCAAGGTTTTACCTACTGTGAAGGCAAGTTACGTGAAGCCATTTGTGTGTGATGTGAAAGGTTGCACTTACAGTGCTATGACAAAAGACGCTCTTATGAAACACCTTGTCAAGACGCACAATTACACAGAGGATATGCTTGCGCAAATGAAAGACCAGTTTAATGTTGCCCCTTTCAGGTGTCAAAAATGTTCCAAGGCCTTCACACGCAACTCCAACCTCAAAGCCCATTACATATCCATTCATAACTATTCACAGGAAGAAGTAAAGAAGATGAAAATTAGGCCTCAGTCCAGTCAACGGCTCCTGGAGAGTGATAAAGGCAGCCCTTGCTCAGTGCCGGAGGTCCCCAGAACAGTTAAAAACACTCCAGTTGTGGACGCACGTCAACCGCCGAAAGATGTTACATGTCCATCAGGCTCCATGAGACAAGATACTGTCAAAACACCCCATTGCATCCCTCCACCATTTGTCCCACAGTCTGCTTTTGTGCCTCAGAGTAGAAGTCTTGCTGCAGGAACACCAACAGTAAATCAGATGGCTGTTCAGCCATCAGTAATCATGTCTAGCCATTCTTCAGTGACTCAGAGAATAGATCAGAATGCAAATGGGTGGTTTCCCACTCCTACCCCTGTTCCTGCTCAAGCCCAATTGTCTCCACTTAAAGAGATTCTACccatagccccttttacacaaaATCCTTCAGCACTGCTTCACAAAGTAAATTTGCCCTTGGACAAGAAGCCCAAACCTAGCAAGCCTAAAGTGGCCAAGCCGAAAGAAtctcccaaaaaaataaaagagaaaaaacctGAGGCGGATGATGCTTTTAGCCCCTATAGACCCTATCGGTGTGTTCATCAAGGCTGTGTGGCGGCATTCACAATCCAGCATAATCTGATCCTGCATTATAAAGCTGTGCATCAGTCTGCTTTGCCTAAGTTTGAGATCAACAGCCATGACGAACAGAACGATGAGGAGGCCGAGGACATGGACCGAGTTGAGGAGCGTGAGGACAAGCTGGATGTGGATGTCAAGGAGGTGGATGAGTTCAGGTGTCAAGTCAAAGACTGTTCTTCCATTTTCCAGACAGTTCCAGACATGCTCCAGCACTACCTTCAGCTCCACAAGTTACCTCTTGAAAAAGCAGGTGCCATGATGTGCAGCATTAACCTAGGTAGATTTCAGTGTGATCAGTCTGAATGCTCCGAGACCTTCACCGGTTTCTGGAAGTACATCCGCCACGTTGACAAAAAGCATAAAGAAACCCAGCTCTCAAAGGTTAACGCTGTGGCGGGGGTGTTCAGATGTCCGATGGAAGGATGCGAAGGCGCGTACAGTACACGATCAAATCTGCTGCGGCACACGATGAAGAAGCACCAAGAAGTGTACAAACGCTTGCTCATGAGCCCACGTGGAACCAAGACTGGGGTTAAACTTGGTCGTCCCAGGAAGTTCCAGAGTCATGTTGTCGAGAAAGAAAACCGAGCGATGAACAAGAAGTCTATTAAGAAGCCAATCCTTAAAAAGAAGAAGCCCAACACCAACAACTGGACCAAATACGGGAAACCCATATTGAAAACGCAGGAAGAAGCCTCCGCCATGTGCACCAAGCGCTTACAGCTGCAGTACGCATGTATGATAAAGGGTTGTGAAACGGTGACGAGTTCAGAGCGAAATATAATGAAGCATTATCTTCAGCATGGCCTCCCAAAACAATACTTGGAAGAACAGAGAAGCAACTTCATCTACTGTAAAAAGATCCCCCGGTCTAAATACAAGCGCATCGCTTCCAGAAGCGACGACACCGATAAATCCGAGGAGAGCTCCATCGAGACTACTGAAAACGAGGAAGTTGCTGAGCCCGGACAGAGTGAATCTGAGTTCTCGAAGCCCACGTCTGGGAAAGAAAGCACAGAGGACCCTGATCTGTCCGATGGCAAGCCGTCTACAGACACCTGCTCAGAGATATCAGTGGTGGTTAAGCGGCGGAGGGGACGGCCGCGCAAGGGCAACGTGAAAGAGCGCAAGCCCACTGGACCTAAAAGGATGACCCGGCAGGGAATTGCCGGGAGCTCCTCTGTCAGTTATGCGGACCTGAACTCTGACTCCACGTCCTCCAGTACTACTTTAATACAGGAGGAAGCTTCCAGTAAAAACACGCCGCTCAGCTCCTTCAAGCCCATGGGCTTCGAGGTGTCCTTCCTTCAGTTTCTGCAGGAGTCAAAGACATCCCAGAAGAGAAAGGCAACAGTGCCGCTCAATGGAAATGCACACAAAAGAATGACTACTTTCCAACTAAAGACTGCCACAGTGGTCTGTAAAAGAGCGGACGCGGAGCTGCGTCCCAGAGAAGCACTCAAGCTGGTGGAGTTTAAAAACCCGCAGAAGCTGACCTCGCTCAGTAACGTCAAGTTTGAGGTGCAGAAGGTTTTTACCAATGTCCTGGAGATCCTACTCAAGCAGCTTCAGGAAATGCGACCCACAGTGATCCTTCAGAAAGAGAAGTAATGCGCAGATCCCCCTGAGGATCAGGATGATGGCTGacttttattagttttaattggACACGAAGATCGAgcgttgattgattgattgtctgGGAAACACTACACACTATCTTAAAGCTCCCCAGTGTGATGTTTTTTAACAGAACTGTGTATGTTAAGCTCACTTCATAGCCGCAGTAGTCGATGAAATACCTCTTAAAGCATGTATGTCCCTATGAAGCTGTTCAGCACATTTCTGTTGCCTTCGGAGTTGATTTCGTTTTGTTTTGAGTATTGGATAGACCTGTACTTTTTAATATTCCATTGGACTCTTTTTCTATCCTGCGGAAGTGAATCTTGATTCTGATGTTATGTAGTGCTGTGTATAATTCGTAACTGTTTTGGTCCTGTTTACcttgtacattttaaatttgtcaaTAATGTTGTGTGTGGCTCTTTGATCAACTACTGCCACCAGCAGTCTGTATGTTAATCAATAGCAACCAGTTTAATACAGCTTGCGTTTTGTTA

Function

symbol description
znf292b Predicted to enable DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability. Orthologous to human ZNF292 (zinc finger protein 292).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9559 Predicted to enable DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability. Orthologous to human ZNF292 (zinc finger protein 292).

Ensembl:

ensembl_id ENSDARG00000043973

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035173 True 8412 mRNA 0.49 8 196541 211920

Neighbor

gene id symbol gene type direction distance location
XLOC_017791 smim8 coding downstream 7611 186277 ~ 188930 (-)
XLOC_017790 si:ch211-241j12.3 coding downstream 13700 159277 ~ 182841 (-)
XLOC_017789 rpf2 coding downstream 41552 150890 ~ 154989 (-)
XLOC_017788 slc16a10 coding downstream 48963 122123 ~ 147578 (-)
XLOC_017787 NA coding downstream 79542 84692 ~ 116999 (-)
XLOC_017793 ccn6 coding upstream 64833 276753 ~ 284865 (-)
XLOC_017794 NA coding upstream 191396 403316 ~ 405366 (-)
XLOC_017795 NA coding upstream 196641 408561 ~ 411919 (-)
XLOC_017796 ufl1 coding upstream 206593 418513 ~ 438646 (-)
XLOC_017797 frk coding upstream 230022 441942 ~ 463786 (-)
XLOC_017928 CU539064.1 misc upstream 9841485 10053405 ~ 10053701 (-)
XLOC_017799 NA non-coding upstream 318591 530511 ~ 534076 (-)
XLOC_017809 BX248418.2 non-coding upstream 986159 1198079 ~ 1198709 (-)
XLOC_017817 NA non-coding upstream 1533305 1745225 ~ 1763478 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000135_00316936_00333617 ZNF292 coding CI01000135 null 316808 ~ 333969 (-)
bowfin (Amia calva) AMCG00003604 NA misc CM030121.1 CM030121.1 11461663 ~ 11482931 (+)