XLOC_017788 (slc16a10)


Basic Information

Item Value
gene id XLOC_017788
gene name slc16a10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 122123 ~ 147578 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035165
gtgtgtgtgtgtgtgtgtcagtgagcaGCAGCTCGCCACAGTGTTGGAGACCATGACGGAGCCGGAGCCCACGCTGGAGCAGGAGCCCACGCCGGAGCCGGAGCCCACGCAGGAGCCCACGCCGGAGCCCACGCCGGAGCCGGAGCCCACGCAGGAGCCAGAGTCAGAGCCGGAGCTGGAGCTAAAGCAGGAGAACGGCTGCACTAAAGCGAGCGAGCAGAAGTCACCGGAGGAGTTCGAGCCCCCCGAGGGCGGCTGGGGGTGGGTGGTGATGCTGGCCTCCATGTGGTGTAACGGCTCGGTGTTCGGCATCCAGAACGCCTTCGGCATCATGTTCGTGTACCTGCTAAATGAGTTCGGCTCCGAGCACGACGCCGACCTGCGCTTCAAAACAGcatggGTGGGCTCTCTGTCGATGGGCATGATCTTCTTCTGCTCTCCAATCGTCAGCGTGTTCACGGATCTGCTGGGCTGTCGGATCACGGCTGTGGGGGGAGCTGCAGTGGGCTGTGTGGGGCTGCTGGCCAGTTCATTCGTCACGTCTCTGGGCCCGATGTACTTCACCTACGGGATAGTGTTCGCGTGTGGCTGCAGTTTTGCGTATCAGCCGAGTCTGGTGATCCTGGGCCACTACTTCAAGCGCAGGCTGGGTCTGGTGAACGGCATCGTGACGGCGGGCAGCAGCGTGTTCACCATCACGCTCCCGTACATGCTGTCGGGCCTGCTGAAGAGCGTGGGGCTGTACCACACGCTGCGGGTGCTGGCCATCTTCATGTTCATCCTCATGCTGGCCGGACTCACCTACAAACCCCTGCTGCCCAAACCCGTCAGCAGCAGCAAACCCGGCAGCCGCTGCCCTCCGCTCAGCAGGATCTTCAACGTCAACATCTGGAAGTCTCTGGGCTACCGCATATGGGCCTTCGGCATCCCGGCGGCCCTCTACGGGTACTTTGTGCCTTACGTTCATCTGatGACACATGTGGAGGAGCGCTTCGGACCGGAAGCTAATAAAGAAGTTCTGCTGGCCTGTATCGGCATCACGTCCGGCGTGGGGCGTCTGATCTTCGGCAGAGTGGCTGACTACGTGCCTGGAGTTAATAAAGTCTTCCTGcagGTGTCTTCATTCATGGTGATCGGCGTGATGTCCATGATGATTCCTCTGTGTCATGTGTTCGGCGGGCTGATCGCCGTGTGTCTGCTCATGGGGCTGTTCGATGGCTGCTTCATCTGCATCATGGCCCCCATCGCCTTCGAGCTGGTGGGCTCCCAGAACGTGTCTCAGGCCATCGGCTTCCTGCTGGGCATGATGTCCATCCCCATGACCGTCGGCCCGCCCATCGCAGGGTTTCTGCGGGACCGTTTGGGCAGCTATGACGTGGCGTTTTACCTGGCCGGTATCCCCCCCCTCATTGGTGGAGCAGTGCTGTGTGCCATTCCCTGGGTGGAGGCGCGCAGGAAGAGGAGAGAGGCGGCAAACACAGCCGAAAACACAGAGAAGATGCTGGAGAGCAGGAGCCCCCCGCTGGAGGACACCGTCTGCAGGACTGAAGAGCCCGAGTCCGTCATCTgaggacagcacacacacacacacacaccccagtgTTGTCCATCAGGAGTGTTAACTGCGTCCGGTGATCTACTACCTCAGTCCACATTAAACTGACCTGAAGCCAGTGTCCCGGAGCTCATGCAGACTCTCCTCTACCCGGAGTGTTGTCAGCGTCACGAGTGCCTCGAGGAGCGTGATGATCAgacagatgatgaagatgatcaGTGCCAAAGCATTTCATGAGGGAAAGACGTTTGATTTGTTATTAATCTCTCTCTGGGGATGACCCTCTCTTTTATACTCTATTTTGTATCTGccagttttgtatttgtttaatttatactTGTTGAACACCAGCCCAGCAAAGCTTTCCCACACGTGCCTGAGACTTTGGCCAGCTCAGATTTACAGTACAGGCATGGGCCGGTGTTGATGACGCTGCTCAGGGTGATCAGATATCTACATTTGCTCATCAGAAGTGATGGCGAGGCTtgatcagtgtgtgctgtgcatTTAGATGTGATTGTGAGGTTTGTGCTGAACACACACCGCTGGCTGCACTTAACAAAGCAGGCTGGAGCTTTATTTGATAGCATTTATTACCTCTACCCTTAATACTACAGTCAGCACATACAGTACATGTGTATTACGTCAACAGCAACAACCTGATATGCAGATCAGCGCTTCTTCAGTCTCGGTGCAGACATGGTGATGGATGAGTTGATTCTGTGCCTCGCTCTCGTCACCTGAGCTGCTGCTGTTCGTGTTGTCTGTGCCACACTGCTGTCAGTGCAGTTCTGCTCCACAATCAATAAAGATAAATGTTTGTATT
>TCONS_00035166
gtttgtgtgtgtgtgtgtgtgtcagtgagcaGCAGCTCGCCACAGTGTTGGAGACCATGACGGAGCCGGAGCCCACGCTGGAGCAGGAGCCCACGCCGGAGCCGGAGCCCACGCAGGAGCCCACGCCGGAGCCCACGCCGGAGCCGGAGCCCACGCAGGAGCCAGAGTCAGAGCCGGAGCTGGAGCTAAAGCAGGAGAACGGCTGCACTAAAGCGAGCGAGCAGAAGTCACCGGAGGAGTTCGAGCCCCCCGAGGGCGGCTGGGGGTGGGTGGTGATGCTGGCCTCCATGTGGTGTAACGGCTCGGTGTTCGGCATCCAGAACGCCTTCGGCATCATGTTCGTGTACCTGCTAAATGAGTTCGGCTCCGAGCACGACGCCGACCTGCGCTTCAAAACAGcatggGTGGGCTCTCTGTCGATGGGCATGATCTTCTTCTGCTCTCCAATCGTCAGCGTGTTCACGGATCTGCTGGGCTGTCGGATCACGGCTGTGGGGGGAGCTGCAGTGGGCTGTGTGGGGCTGCTGGCCAGTTCATTCGTCACGTCTCTGGGCCCGATGTACTTCACCTACGGGATAGTGTTCGCGTGTGGCTGCAGTTTTGCGTATCAGCCGAGTCTGGTGATCCTGGGCCACTACTTCAAGCGCAGGCTGGGTCTGGTGAACGGCATCGTGACGGCGGGCAGCAGCGTGTTCACCATCACGCTCCCGTACATGCTGTCGGGCCTGCTGAAGAGCGTGGGGCTGTACCACACGCTGCGGGTGCTGGCCATCTTCATGTTCATCCTCATGCTGGCCGGACTCACCTACAAACCCCTGCTGCCCAAACCCGTCAGCAGCAGCAAACCCGGCAGCCGCTGCCCTCCGCTCAGCAGGATCTTCAACGTCAACATCTGGAAGTCTCTGGGCTACCGCATATGGGCCTTCGGCATCCCGGCGGCCCTCTACGGGTACTTTGTGCCTTACGTTCATCTGatGACACATGTGGAGGAGCGCTTCGGACCGGAAGCTAATAAAGAAGTTCTGCTGGCCTGTATCGGCATCACGTCCGGCGTGGGGCGTCTGATCTTCGGCAGAGTGGCTGACTACGTGCCTGGAGTTAATAAAGTCTTCCTGcagGTGTCTTCATTCATGGTGATCGGCGTGATGTCCATGATGATTCCTCTGTGTCATGTGTTCGGCGGGCTGATCGCCGTGTGTCTGCTCATGGGGCTGTTCGATGGCTGCTTCATCTGCATCATGGCCCCCATCGCCTTCGAGCTGGTGGGCTCCCAGAACGTGTCTCAGGCCATCGGCTTCCTGCTGGGCATGATGTCCATCCCCATGACCGTCGGCCCGCCCATCGCAGGGTTTCTGCGGGACCGTTTGGGCAGCTATGACGTGGCGTTTTACCTGGCCGGTATCCCCCCCCTCATTGGTGGAGCAGTGCTGTGTGCCATTCCCTGGGTGGAGGCGCGCAGGAAGAGGAGAGAGGCGGCAAACACAGCCGAAAACACAGAGAAGATGCTGGAGAGCAGGAGCCCCCCGCTGGAGGACACCGTCTGCAGGACTGAAGAGCCCGAGTCCGTCATCTgaggacagcacacacacac

Function

symbol description
slc16a10 Predicted to enable aromatic amino acid transmembrane transporter activity and thyroid hormone transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Predicted to be integral component of membrane. Is expressed in facial ganglion; glossopharyngeal ganglion; liver; trigeminal ganglion; and vagal ganglion. Orthologous to human SLC16A10 (solute carrier family 16 member 10).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015173 aromatic amino acid transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0015349 thyroid hormone transmembrane transporter activity molecular_function

KEGG:

id description
ko04919 Thyroid hormone signaling pathway
ko04974 Protein digestion and absorption
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-040724-214 Predicted to enable aromatic amino acid transmembrane transporter activity and thyroid hormone transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Predicted to be integral component of membrane. Is expressed in facial ganglion; glossopharyngeal ganglion; liver; trigeminal ganglion; and vagal ganglion. Orthologous to human SLC16A10 (solute carrier family 16 member 10).

Ensembl:

ensembl_id ENSDARG00000020984

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035165 False 2381 mRNA 0.56 7 122123 147574
TCONS_00035166 True 1591 mRNA 0.61 6 124485 147578

Neighbor

gene id symbol gene type direction distance location
XLOC_017787 NA coding downstream 5124 84692 ~ 116999 (-)
XLOC_017786 zgc:174972 coding downstream 105250 9604 ~ 16873 (-)
XLOC_017789 rpf2 coding upstream 3312 150890 ~ 154989 (-)
XLOC_017790 si:ch211-241j12.3 coding upstream 11699 159277 ~ 182841 (-)
XLOC_017791 smim8 coding upstream 38699 186277 ~ 188930 (-)
XLOC_017792 znf292b coding upstream 48963 196541 ~ 211920 (-)
XLOC_017793 ccn6 coding upstream 129175 276753 ~ 284865 (-)
XLOC_017928 CU539064.1 misc upstream 9905827 10053405 ~ 10053701 (-)
XLOC_017794 NA non-coding upstream 255738 403316 ~ 405366 (-)
XLOC_017795 NA non-coding upstream 260983 408561 ~ 411919 (-)
XLOC_017799 NA non-coding upstream 382933 530511 ~ 534076 (-)
XLOC_017809 BX248418.2 non-coding upstream 1050501 1198079 ~ 1198709 (-)
XLOC_017817 NA non-coding upstream 1597647 1745225 ~ 1763478 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000135_00164301_00167634 NA coding CI01000135 null 162430 ~ 167634 (-)
bowfin (Amia calva) AMCG00003807 NA coding CM030121.1 CM030121.1 18892764 ~ 18912514 (-)